Wall clock time and date at job start Mon Mar 30 2020 01:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 H 1.09000 * 109.47011 * 305.00832 * 3 2 1 5 5 C 1.50701 * 109.47000 * 185.00110 * 3 2 1 6 6 H 1.08002 * 119.99761 * 239.99828 * 5 3 2 7 7 C 1.37871 * 119.99694 * 60.28391 * 5 3 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 3 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 3 10 10 H 1.48504 * 109.47209 * 89.99886 * 9 7 5 11 11 H 1.48501 * 109.47358 * 209.99377 * 9 7 5 12 12 H 1.48496 * 109.47341 * 329.99989 * 9 7 5 13 13 C 1.53004 * 109.46471 * 65.00475 * 3 2 1 14 14 H 1.08994 * 113.41025 * 54.13410 * 13 3 2 15 15 C 1.55892 * 114.37513 * 187.81457 * 13 3 2 16 16 C 1.55881 * 102.94927 * 137.59783 * 15 13 3 17 17 S 1.83086 * 82.43920 * 335.79190 * 16 15 13 18 18 H 1.08999 * 109.47019 * 299.99139 * 1 2 3 19 19 H 1.08997 * 109.47178 * 59.99345 * 1 2 3 20 20 H 1.08998 * 109.47411 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47019 * 240.00861 * 2 1 3 22 22 H 1.08996 * 109.47643 * 120.00914 * 2 1 3 23 23 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 24 24 H 1.09000 * 110.81754 * 256.12856 * 15 13 3 25 25 H 1.08990 * 110.82526 * 19.06035 * 15 13 3 26 26 H 1.09000 * 114.38317 * 222.39826 * 16 15 13 27 27 H 1.09004 * 114.41448 * 89.18772 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1429 0.8836 -1.2308 8 7 3.4058 0.3422 -2.1759 9 14 6.0043 0.8927 -1.3880 10 1 6.5592 -0.3388 -0.7711 11 1 6.3795 0.9392 -2.8241 12 1 6.5539 2.0849 -0.6939 13 6 1.6353 2.1264 1.3075 14 1 1.9514 1.5817 2.1970 15 6 1.9290 3.6568 1.3508 16 6 0.6437 4.2406 2.0121 17 16 -0.1016 2.7040 1.3521 18 1 -0.3633 0.5137 0.8901 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5137 -0.8901 22 1 1.8934 -0.5139 0.8898 23 1 3.8287 -0.0519 -2.9548 24 1 2.8076 3.8655 1.9611 25 1 2.0619 4.0545 0.3448 26 1 0.2745 5.1551 1.5479 27 1 0.6803 4.2916 3.1003 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634249.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:57 Heat of formation + Delta-G solvation = -15.599426 kcal Electronic energy + Delta-G solvation = -9853.671108 eV Core-core repulsion = 8123.072526 eV Total energy + Delta-G solvation = -1730.598583 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.93808 -35.04334 -33.53774 -29.72139 -26.87212 -24.70521 -22.26240 -21.19656 -18.58117 -17.45742 -16.65682 -15.66287 -15.26968 -14.82309 -14.29894 -13.99142 -13.61436 -13.13782 -13.01762 -12.67756 -12.62881 -12.45547 -12.21851 -11.81904 -11.53454 -11.04426 -10.92629 -10.39914 -9.93680 -8.60407 -8.05352 -6.21131 0.93778 1.38857 1.44849 1.47147 1.55716 2.46594 3.20681 3.78217 3.84553 4.10783 4.42924 4.57494 4.60457 4.68465 4.71624 4.89909 4.97823 5.15578 5.26335 5.36347 5.51087 5.66402 5.94569 6.08267 6.34843 6.88597 7.46713 8.97963 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.049938 B = 0.013894 C = 0.011449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.562622 B = 2014.781345 C = 2445.038219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C 0.071 3.929 4 H 0.004 0.996 5 C -0.521 4.521 6 H 0.061 0.939 7 C 0.013 3.987 8 N -0.917 5.917 9 Si 0.955 3.045 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.001 3.999 14 H 0.100 0.900 15 C -0.133 4.133 16 C -0.059 4.059 17 S -0.389 6.389 18 H 0.056 0.944 19 H 0.033 0.967 20 H 0.051 0.949 21 H 0.066 0.934 22 H 0.033 0.967 23 H 0.260 0.740 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 4.792 6.795 8.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.154 4.154 3 C 0.051 3.949 4 H 0.022 0.978 5 C -0.561 4.561 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C -0.127 4.127 14 H 0.118 0.882 15 C -0.171 4.171 16 C -0.206 4.206 17 S -0.163 6.163 18 H 0.074 0.926 19 H 0.053 0.947 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.052 0.948 23 H 0.069 0.931 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.221 4.278 6.344 8.302 hybrid contribution 1.831 0.079 -0.217 1.845 sum -1.390 4.357 6.127 7.645 Atomic orbital electron populations 1.21804 0.97106 1.00027 1.00544 1.21498 0.93535 0.99437 1.00882 1.18527 0.94747 0.92047 0.89532 0.97831 1.21382 0.91849 1.37566 1.05304 0.92041 1.25734 1.02338 0.95016 0.95508 1.70031 1.36527 1.39308 1.09820 0.85595 0.80587 0.78697 0.77007 1.20267 1.21369 1.18905 1.24590 0.87022 0.98534 1.02512 0.88153 1.23413 0.98952 0.92434 1.02336 1.24807 0.95364 0.96726 1.03713 1.88488 1.21161 1.21468 1.85188 0.92591 0.94731 0.93030 0.91592 0.94835 0.93070 0.89926 0.90633 0.86297 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.83 9.13 71.98 0.66 -5.17 15 2 C -0.12 -5.60 5.24 30.60 0.16 -5.44 15 3 C 0.07 3.52 1.58 -11.54 -0.02 3.50 15 4 H 0.00 0.20 8.13 -2.39 -0.02 0.18 15 5 C -0.52 -27.44 8.30 25.60 0.21 -27.23 15 6 H 0.06 3.10 7.74 -2.91 -0.02 3.08 15 7 C 0.01 0.69 5.30 84.65 0.45 1.14 15 8 N -0.92 -52.50 11.30 21.45 0.24 -52.26 15 9 Si 0.96 42.44 29.54 68.60 2.03 44.47 15 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 11 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 12 H -0.26 -11.25 7.11 99.48 0.71 -10.55 15 13 C 0.00 0.06 3.53 31.60 0.11 0.17 15 14 H 0.10 3.91 8.14 -2.39 -0.02 3.89 15 15 C -0.13 -4.51 6.28 32.59 0.20 -4.30 15 16 C -0.06 -1.61 9.09 72.98 0.66 -0.95 15 17 S -0.39 -14.46 20.48 -56.49 -1.16 -15.62 15 18 H 0.06 2.29 5.09 -9.25 -0.05 2.24 15 19 H 0.03 1.52 8.14 -2.39 -0.02 1.50 15 20 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 21 H 0.07 3.62 5.96 -2.39 -0.01 3.60 15 22 H 0.03 1.56 8.14 -2.39 -0.02 1.54 15 23 H 0.26 14.23 8.31 -92.71 -0.77 13.46 15 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 25 H 0.07 2.84 8.01 -2.39 -0.02 2.82 15 26 H 0.12 2.78 8.14 -2.39 -0.02 2.76 15 27 H 0.12 2.67 8.14 -2.39 -0.02 2.66 15 Total: -1.00 -58.13 231.32 4.64 -53.48 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.09 Total: 8.22 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 2.44 Total: -38.29 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.24 Total: -52.26 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -14.46 SS G_CDS: -1.16 Total: -15.62 kcal Total: -58.13 4.64 -53.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634249.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.884 kcal (2) G-P(sol) polarization free energy of solvation -58.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds