Wall clock time and date at job start Mon Mar 30 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47273 * 2 1 4 4 H 1.09005 * 109.47390 * 54.24568 * 3 2 1 5 5 C 1.50700 * 109.47400 * 174.23899 * 3 2 1 6 6 H 1.08000 * 119.99900 * 114.55514 * 5 3 2 7 7 C 1.37880 * 120.00236 * 294.56240 * 5 3 2 8 8 N 1.31514 * 119.99937 * 350.55226 * 7 5 3 9 9 Si 1.86796 * 119.99911 * 170.55038 * 7 5 3 10 10 H 1.48494 * 109.47572 * 60.00226 * 9 7 5 11 11 H 1.48499 * 109.46828 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47213 * 299.99795 * 9 7 5 13 13 C 1.52997 * 109.47136 * 294.24277 * 3 2 1 14 14 H 1.09000 * 112.49468 * 50.22607 * 13 3 2 15 15 C 1.53042 * 113.14624 * 179.97438 * 13 3 2 16 16 C 1.53040 * 89.86704 * 148.15455 * 15 13 3 17 17 S 1.81429 * 113.14777 * 280.39854 * 13 3 2 18 18 H 1.08998 * 109.47467 * 296.89877 * 1 2 3 19 19 H 1.09003 * 109.47057 * 56.89657 * 1 2 3 20 20 H 1.09003 * 109.47765 * 176.89733 * 1 2 3 21 21 H 1.09005 * 109.46819 * 120.00029 * 2 1 3 22 22 H 1.09001 * 109.47112 * 239.99657 * 2 1 3 23 23 H 0.96998 * 119.99852 * 180.02562 * 8 7 5 24 24 H 1.09000 * 113.15306 * 263.40166 * 15 13 3 25 25 H 1.08999 * 113.15579 * 32.85622 * 15 13 3 26 26 H 1.09008 * 113.15210 * 82.36188 * 16 15 13 27 27 H 1.09003 * 113.15500 * 211.80765 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5950 1.9852 0.8340 5 6 3.5402 1.4448 0.1426 6 1 4.1589 1.8057 -0.6657 7 6 4.1230 0.9862 1.3050 8 7 3.3766 0.7222 2.3551 9 14 5.9728 0.7399 1.3882 10 1 6.6565 2.0325 1.1300 11 1 6.3458 0.2429 2.7369 12 1 6.3867 -0.2523 0.3637 13 6 1.6516 2.1207 -1.3153 14 1 0.5947 1.9975 -1.5518 15 6 2.1222 3.5742 -1.4044 16 6 2.2856 3.4246 -2.9187 17 16 2.7476 1.6842 -2.6936 18 1 -0.3634 0.4649 0.9164 19 1 -0.3633 0.5613 -0.8609 20 1 -0.3635 -1.0261 -0.0556 21 1 1.8933 -0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.7866 0.3999 3.1729 24 1 1.3510 4.2922 -1.1256 25 1 3.0646 3.7521 -0.8865 26 1 1.3512 3.5523 -3.4653 27 1 3.0929 4.0340 -3.3250 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260634262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:58 Heat of formation + Delta-G solvation = 2.270816 kcal Electronic energy + Delta-G solvation = -9940.453032 eV Core-core repulsion = 8210.629361 eV Total energy + Delta-G solvation = -1729.823671 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.74404 -33.53638 -31.58231 -27.86706 -24.64397 -22.72429 -21.16026 -19.30327 -16.92782 -15.27113 -14.87574 -13.95161 -13.27291 -13.08350 -12.73250 -12.23213 -12.19926 -11.51161 -11.16040 -10.89840 -10.75156 -10.54925 -10.11203 -9.95518 -9.77816 -9.23768 -8.95687 -8.72196 -8.22324 -6.69214 -5.95295 -3.93254 2.64188 2.94700 3.38390 3.42635 3.48099 4.52379 5.18980 5.37904 5.45376 5.83296 5.88361 5.96332 6.22660 6.23112 6.30541 6.44751 6.55971 6.89616 6.90661 7.14221 7.35960 7.75320 7.89324 8.07653 8.49910 9.13372 9.69088 11.14341 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.036288 B = 0.017562 C = 0.013707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.418547 B = 1593.971165 C = 2042.234845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.057 3.943 4 H 0.046 0.954 5 C -0.508 4.508 6 H 0.077 0.923 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.278 1.278 13 C -0.034 4.034 14 H 0.085 0.915 15 C -0.115 4.115 16 C -0.099 4.099 17 S -0.289 6.289 18 H 0.046 0.954 19 H 0.039 0.961 20 H 0.033 0.967 21 H 0.075 0.925 22 H 0.034 0.966 23 H 0.258 0.742 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 3.655 -5.706 7.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C 0.038 3.962 4 H 0.064 0.936 5 C -0.546 4.546 6 H 0.095 0.905 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.714 3.286 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.203 1.203 13 C -0.163 4.163 14 H 0.103 0.897 15 C -0.153 4.153 16 C -0.248 4.248 17 S -0.064 6.064 18 H 0.065 0.935 19 H 0.058 0.942 20 H 0.052 0.948 21 H 0.094 0.906 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.863 2.509 -6.112 7.201 hybrid contribution 0.319 0.514 0.537 0.809 sum -2.545 3.023 -5.575 6.834 Atomic orbital electron populations 1.21886 0.99184 0.99322 1.00231 1.21537 0.91780 1.00371 1.01266 1.18697 0.96743 0.91465 0.89321 0.93631 1.21452 0.90947 1.41550 1.00684 0.90457 1.24954 0.97576 0.95832 0.95535 1.69967 1.35225 1.45870 1.02141 0.86757 0.86447 0.78679 0.76748 1.20335 1.21649 1.20324 1.24441 0.97305 0.96249 0.98258 0.89724 1.22858 1.03641 0.96092 0.92730 1.24131 1.03145 0.96580 1.00899 1.88732 1.65867 1.16456 1.35364 0.93501 0.94227 0.94779 0.90606 0.94691 0.93190 0.91225 0.87192 0.89670 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.78 37.16 0.36 -2.54 15 2 C -0.11 -2.61 5.28 -26.74 -0.14 -2.76 15 3 C 0.06 1.37 1.67 -91.78 -0.15 1.21 15 4 H 0.05 1.19 8.09 -51.93 -0.42 0.77 15 5 C -0.51 -13.53 6.97 -34.44 -0.24 -13.77 15 6 H 0.08 2.08 5.99 -52.49 -0.31 1.76 15 7 C 0.06 1.71 5.15 -17.82 -0.09 1.62 15 8 N -0.89 -25.49 12.16 55.43 0.67 -24.82 15 9 Si 0.89 21.67 29.55 -169.99 -5.02 16.64 15 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 13 C -0.03 -0.69 3.25 -26.71 -0.09 -0.78 15 14 H 0.08 1.58 6.38 -51.93 -0.33 1.24 15 15 C -0.11 -2.03 7.01 -26.69 -0.19 -2.21 15 16 C -0.10 -1.59 7.98 37.18 0.30 -1.29 15 17 S -0.29 -5.96 22.14 -107.50 -2.38 -8.34 15 18 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.04 0.70 6.35 -51.93 -0.33 0.37 15 20 H 0.03 0.60 8.14 -51.93 -0.42 0.18 15 21 H 0.08 1.99 6.79 -51.93 -0.35 1.64 15 22 H 0.03 0.83 8.01 -51.93 -0.42 0.42 15 23 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.11 2.16 7.08 -51.93 -0.37 1.80 15 26 H 0.08 1.19 8.14 -51.92 -0.42 0.77 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 LS Contribution 229.96 15.07 3.47 3.47 Total: -1.00 -28.07 229.96 -7.28 -35.35 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -3.78 Total: -1.78 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -0.24 Total: -20.51 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.67 Total: -24.82 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -2.38 Total: -8.34 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.07 -7.28 -35.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.620 kcal (2) G-P(sol) polarization free energy of solvation -28.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds