Wall clock time and date at job start Mon Mar 30 2020 01:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47273 * 2 1 4 4 H 1.09005 * 109.47390 * 54.24568 * 3 2 1 5 5 C 1.50700 * 109.47400 * 174.23899 * 3 2 1 6 6 H 1.08000 * 119.99900 * 114.55514 * 5 3 2 7 7 C 1.37880 * 120.00236 * 294.56240 * 5 3 2 8 8 N 1.31514 * 119.99937 * 350.55226 * 7 5 3 9 9 Si 1.86796 * 119.99911 * 170.55038 * 7 5 3 10 10 H 1.48494 * 109.47572 * 60.00226 * 9 7 5 11 11 H 1.48499 * 109.46828 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47213 * 299.99795 * 9 7 5 13 13 C 1.52997 * 109.47136 * 294.24277 * 3 2 1 14 14 H 1.09000 * 112.49468 * 50.22607 * 13 3 2 15 15 C 1.53042 * 113.14624 * 179.97438 * 13 3 2 16 16 C 1.53040 * 89.86704 * 148.15455 * 15 13 3 17 17 S 1.81429 * 113.14777 * 280.39854 * 13 3 2 18 18 H 1.08998 * 109.47467 * 296.89877 * 1 2 3 19 19 H 1.09003 * 109.47057 * 56.89657 * 1 2 3 20 20 H 1.09003 * 109.47765 * 176.89733 * 1 2 3 21 21 H 1.09005 * 109.46819 * 120.00029 * 2 1 3 22 22 H 1.09001 * 109.47112 * 239.99657 * 2 1 3 23 23 H 0.96998 * 119.99852 * 180.02562 * 8 7 5 24 24 H 1.09000 * 113.15306 * 263.40166 * 15 13 3 25 25 H 1.08999 * 113.15579 * 32.85622 * 15 13 3 26 26 H 1.09008 * 113.15210 * 82.36188 * 16 15 13 27 27 H 1.09003 * 113.15500 * 211.80765 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5950 1.9852 0.8340 5 6 3.5402 1.4448 0.1426 6 1 4.1589 1.8057 -0.6657 7 6 4.1230 0.9862 1.3050 8 7 3.3766 0.7222 2.3551 9 14 5.9728 0.7399 1.3882 10 1 6.6565 2.0325 1.1300 11 1 6.3458 0.2429 2.7369 12 1 6.3867 -0.2523 0.3637 13 6 1.6516 2.1207 -1.3153 14 1 0.5947 1.9975 -1.5518 15 6 2.1222 3.5742 -1.4044 16 6 2.2856 3.4246 -2.9187 17 16 2.7476 1.6842 -2.6936 18 1 -0.3634 0.4649 0.9164 19 1 -0.3633 0.5613 -0.8609 20 1 -0.3635 -1.0261 -0.0556 21 1 1.8933 -0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.7866 0.3999 3.1729 24 1 1.3510 4.2922 -1.1256 25 1 3.0646 3.7521 -0.8865 26 1 1.3512 3.5523 -3.4653 27 1 3.0929 4.0340 -3.3250 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634262.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:58 Heat of formation + Delta-G solvation = -13.182291 kcal Electronic energy + Delta-G solvation = -9941.123129 eV Core-core repulsion = 8210.629361 eV Total energy + Delta-G solvation = -1730.493768 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.41604 -35.25383 -33.54007 -29.63141 -26.45735 -24.42391 -22.65715 -21.14534 -18.79729 -17.01901 -16.70523 -15.74462 -14.90566 -14.83444 -14.25080 -13.91975 -13.84715 -13.22640 -12.89711 -12.67226 -12.49606 -12.36349 -11.90450 -11.74196 -11.56241 -11.04730 -10.66381 -10.52630 -10.25898 -8.32360 -8.05955 -6.07256 1.27183 1.34697 1.40840 1.43627 1.50368 2.48437 3.26555 3.77744 4.10025 4.35966 4.46653 4.56190 4.63862 4.68785 4.76241 4.89901 5.00272 5.21032 5.34417 5.42431 5.51729 5.75989 5.92732 6.01404 6.47837 7.04471 7.56769 9.03047 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.036288 B = 0.017562 C = 0.013707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.418547 B = 1593.971165 C = 2042.234845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.107 4.107 3 C 0.056 3.944 4 H 0.021 0.979 5 C -0.509 4.509 6 H 0.072 0.928 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.936 3.064 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.282 1.282 13 C -0.027 4.027 14 H 0.107 0.893 15 C -0.113 4.113 16 C -0.064 4.064 17 S -0.366 6.366 18 H 0.045 0.955 19 H 0.060 0.940 20 H 0.050 0.950 21 H 0.039 0.961 22 H 0.023 0.977 23 H 0.256 0.744 24 H 0.104 0.896 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 4.843 -6.923 9.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.036 3.964 4 H 0.038 0.962 5 C -0.548 4.548 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.562 5.562 9 Si 0.764 3.236 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.208 1.208 13 C -0.155 4.155 14 H 0.125 0.875 15 C -0.151 4.151 16 C -0.212 4.212 17 S -0.141 6.141 18 H 0.064 0.936 19 H 0.079 0.921 20 H 0.069 0.931 21 H 0.057 0.943 22 H 0.042 0.958 23 H 0.065 0.935 24 H 0.122 0.878 25 H 0.103 0.897 26 H 0.137 0.863 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.629 3.708 -7.337 8.987 hybrid contribution 0.536 0.172 0.877 1.042 sum -3.093 3.880 -6.460 8.146 Atomic orbital electron populations 1.21765 0.95815 1.00883 1.01136 1.21385 0.94788 0.99505 0.98834 1.18601 0.95125 0.91871 0.90756 0.96153 1.21751 0.92674 1.40277 1.00058 0.90977 1.25595 1.00947 0.96265 0.95623 1.70072 1.36441 1.47223 1.02466 0.85940 0.82639 0.78614 0.76439 1.19477 1.21457 1.20814 1.24437 0.98177 0.97387 0.95468 0.87488 1.22769 1.03363 0.95064 0.93933 1.24158 1.05165 0.91930 0.99976 1.89042 1.66832 1.21731 1.36491 0.93565 0.92086 0.93113 0.94262 0.95814 0.93504 0.87797 0.89730 0.86275 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.18 9.78 71.98 0.70 -4.47 15 2 C -0.11 -5.04 5.28 30.59 0.16 -4.87 15 3 C 0.06 2.67 1.67 -11.54 -0.02 2.65 15 4 H 0.02 1.08 8.09 -2.38 -0.02 1.06 15 5 C -0.51 -27.37 6.97 25.60 0.18 -27.19 15 6 H 0.07 3.90 5.99 -2.91 -0.02 3.88 15 7 C 0.01 0.75 5.15 84.66 0.44 1.19 15 8 N -0.92 -53.73 12.16 21.45 0.26 -53.47 15 9 Si 0.94 45.00 29.55 68.60 2.03 47.03 15 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 15 12 H -0.28 -13.66 7.11 99.48 0.71 -12.95 15 13 C -0.03 -1.02 3.25 30.61 0.10 -0.92 15 14 H 0.11 3.61 6.38 -2.39 -0.02 3.60 15 15 C -0.11 -3.65 7.01 30.62 0.21 -3.44 15 16 C -0.06 -1.82 7.98 72.00 0.57 -1.24 15 17 S -0.37 -14.54 22.14 -56.49 -1.25 -15.79 15 18 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 19 H 0.06 2.00 6.35 -2.39 -0.02 1.98 15 20 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 21 H 0.04 2.11 6.79 -2.38 -0.02 2.09 15 22 H 0.02 1.13 8.01 -2.39 -0.02 1.11 15 23 H 0.26 14.43 8.31 -92.71 -0.77 13.66 15 24 H 0.10 2.69 8.14 -2.39 -0.02 2.67 15 25 H 0.08 3.20 7.08 -2.39 -0.02 3.18 15 26 H 0.12 2.66 8.14 -2.38 -0.02 2.64 15 27 H 0.10 2.54 8.14 -2.39 -0.02 2.53 15 Total: -1.00 -60.97 229.96 4.52 -56.45 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 1.13 Total: 4.07 kcal Atomic # 6 Polarization: -40.65 SS G_CDS: 2.35 Total: -38.30 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: 0.26 Total: -53.47 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: -14.54 SS G_CDS: -1.25 Total: -15.79 kcal Total: -60.97 4.52 -56.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634262.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.269 kcal (2) G-P(sol) polarization free energy of solvation -60.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds