Wall clock time and date at job start Mon Mar 30 2020 01:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47263 * 2 1 4 4 H 1.09004 * 109.46720 * 305.00406 * 3 2 1 5 5 C 1.50699 * 109.47141 * 185.00052 * 3 2 1 6 6 H 1.07997 * 119.99711 * 239.99475 * 5 3 2 7 7 C 1.37875 * 119.99955 * 60.00276 * 5 3 2 8 8 N 1.31516 * 120.00036 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99691 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47258 * 90.00158 * 9 7 5 11 11 H 1.48500 * 109.47030 * 209.99729 * 9 7 5 12 12 H 1.48501 * 109.47323 * 329.99750 * 9 7 5 13 13 C 1.53005 * 109.46927 * 64.99813 * 3 2 1 14 14 H 1.08998 * 112.49531 * 314.77857 * 13 3 2 15 15 C 1.53042 * 113.14475 * 184.99947 * 13 3 2 16 16 C 1.53042 * 89.86490 * 211.84627 * 15 13 3 17 17 S 1.81425 * 89.93235 * 32.87798 * 16 15 13 18 18 H 1.09000 * 109.46578 * 180.02562 * 1 2 3 19 19 H 1.09000 * 109.47310 * 299.99953 * 1 2 3 20 20 H 1.08999 * 109.47335 * 60.00050 * 1 2 3 21 21 H 1.09000 * 109.47310 * 240.00047 * 2 1 3 22 22 H 1.08999 * 109.47335 * 119.99950 * 2 1 3 23 23 H 0.97001 * 119.99348 * 179.97438 * 8 7 5 24 24 H 1.09001 * 113.14911 * 96.59830 * 15 13 3 25 25 H 1.08996 * 113.15484 * 327.10511 * 15 13 3 26 26 H 1.09002 * 113.14805 * 148.15749 * 16 15 13 27 27 H 1.09003 * 113.15177 * 277.60193 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5549 -0.3501 -0.7603 11 1 6.3829 0.9224 -2.8173 12 1 6.5569 2.0739 -0.6902 13 6 1.6352 2.1266 1.3074 14 1 0.5970 1.9318 1.5759 15 6 1.9981 3.6128 1.3461 16 6 2.2102 3.5179 2.8588 17 16 2.7951 1.8112 2.6675 18 1 -0.3632 -1.0277 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8934 -0.5138 0.8900 23 1 3.8293 -0.0611 -2.9499 24 1 1.1686 4.2638 1.0697 25 1 2.9116 3.8454 0.7989 26 1 2.9802 4.1961 3.2268 27 1 1.2830 3.5920 3.4270 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634274.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:00 Heat of formation + Delta-G solvation = -11.574595 kcal Electronic energy + Delta-G solvation = -9947.831831 eV Core-core repulsion = 8217.407778 eV Total energy + Delta-G solvation = -1730.424053 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.41222 -35.29974 -33.44551 -29.65400 -26.43074 -24.42113 -22.65816 -21.10039 -18.79442 -17.03463 -16.72473 -15.73476 -14.87808 -14.83060 -14.23938 -13.96166 -13.83654 -13.12529 -12.91925 -12.62937 -12.51935 -12.33397 -11.85181 -11.72982 -11.50417 -11.15800 -10.61911 -10.44396 -10.29251 -8.30678 -8.01283 -6.08539 1.27813 1.35455 1.40866 1.43319 1.52271 2.48641 3.27583 3.76524 4.10024 4.36916 4.48037 4.59882 4.64955 4.70263 4.79257 4.91368 4.99247 5.23628 5.35805 5.40147 5.57416 5.77185 5.95035 6.15410 6.49912 7.03795 7.56986 9.03472 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.036143 B = 0.017797 C = 0.013582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.509125 B = 1572.877535 C = 2061.104955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.116 4.116 3 C 0.056 3.944 4 H 0.017 0.983 5 C -0.507 4.507 6 H 0.074 0.926 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.941 3.059 10 H -0.287 1.287 11 H -0.286 1.286 12 H -0.267 1.267 13 C -0.028 4.028 14 H 0.107 0.893 15 C -0.112 4.112 16 C -0.066 4.066 17 S -0.365 6.365 18 H 0.047 0.953 19 H 0.057 0.943 20 H 0.046 0.954 21 H 0.061 0.939 22 H 0.015 0.985 23 H 0.255 0.745 24 H 0.106 0.894 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.607 5.692 6.296 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.037 3.963 4 H 0.035 0.965 5 C -0.546 4.546 6 H 0.092 0.908 7 C -0.188 4.188 8 N -0.563 5.563 9 Si 0.769 3.231 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.156 4.156 14 H 0.125 0.875 15 C -0.151 4.151 16 C -0.214 4.214 17 S -0.140 6.140 18 H 0.066 0.934 19 H 0.076 0.924 20 H 0.065 0.935 21 H 0.079 0.921 22 H 0.034 0.966 23 H 0.064 0.936 24 H 0.124 0.876 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.719 4.616 6.736 8.973 hybrid contribution 0.469 0.177 -0.843 0.981 sum -3.250 4.793 5.894 8.263 Atomic orbital electron populations 1.21761 0.96113 1.00656 1.00954 1.21462 0.94434 0.99683 0.99881 1.18615 0.94992 0.92046 0.90646 0.96497 1.21878 0.92736 1.35647 1.04379 0.90763 1.25630 1.01243 0.95874 0.96039 1.70014 1.35816 1.40379 1.10063 0.85804 0.82338 0.78264 0.76739 1.21383 1.21199 1.19185 1.24483 0.97455 0.97963 0.95651 0.87545 1.22768 1.03647 0.94470 0.94186 1.24153 1.04345 0.92981 0.99966 1.89095 1.61843 1.23896 1.39193 0.93372 0.92368 0.93509 0.92097 0.96591 0.93555 0.87588 0.89752 0.88059 0.86355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.21 9.71 71.98 0.70 -4.51 15 2 C -0.12 -5.58 5.24 30.60 0.16 -5.42 15 3 C 0.06 2.70 1.80 -11.54 -0.02 2.68 15 4 H 0.02 0.89 8.14 -2.39 -0.02 0.87 15 5 C -0.51 -27.38 7.15 25.60 0.18 -27.20 15 6 H 0.07 4.03 5.98 -2.91 -0.02 4.02 15 7 C 0.01 0.52 5.29 84.65 0.45 0.97 15 8 N -0.92 -53.58 11.29 21.45 0.24 -53.34 15 9 Si 0.94 45.07 29.54 68.60 2.03 47.09 15 10 H -0.29 -13.85 7.11 99.48 0.71 -13.15 15 11 H -0.29 -13.43 7.11 99.48 0.71 -12.73 15 12 H -0.27 -12.40 7.11 99.48 0.71 -11.70 15 13 C -0.03 -1.06 3.30 30.61 0.10 -0.96 15 14 H 0.11 3.64 6.27 -2.39 -0.01 3.63 15 15 C -0.11 -3.58 7.04 30.62 0.22 -3.36 15 16 C -0.07 -1.88 7.98 72.00 0.57 -1.30 15 17 S -0.37 -14.71 22.08 -56.49 -1.25 -15.96 15 18 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 19 H 0.06 1.93 6.37 -2.39 -0.02 1.92 15 20 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.06 3.35 5.95 -2.39 -0.01 3.34 15 22 H 0.02 0.77 8.14 -2.39 -0.02 0.75 15 23 H 0.26 14.32 8.31 -92.71 -0.77 13.55 15 24 H 0.11 2.67 8.14 -2.39 -0.02 2.65 15 25 H 0.08 3.11 7.37 -2.39 -0.02 3.09 15 26 H 0.10 2.55 8.14 -2.39 -0.02 2.53 15 27 H 0.12 2.66 8.14 -2.39 -0.02 2.64 15 Total: -1.00 -61.06 228.99 4.52 -56.55 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.13 Total: 4.76 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 2.36 Total: -39.11 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: 0.24 Total: -53.34 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -14.71 SS G_CDS: -1.25 Total: -15.96 kcal Total: -61.06 4.52 -56.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634274.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.974 kcal (2) G-P(sol) polarization free energy of solvation -61.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds