Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47440 * 2 1 4 4 H 1.09003 * 109.47292 * 54.30415 * 3 2 1 5 5 C 1.50697 * 109.47563 * 174.31365 * 3 2 1 6 6 H 1.07999 * 120.00091 * 114.40540 * 5 3 2 7 7 C 1.37879 * 119.99677 * 294.40828 * 5 3 2 8 8 N 1.31520 * 119.99914 * 351.07480 * 7 5 3 9 9 Si 1.86799 * 119.99894 * 171.08032 * 7 5 3 10 10 H 1.48502 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47175 * 119.99605 * 9 7 5 12 12 H 1.48497 * 109.47091 * 239.99898 * 9 7 5 13 13 C 1.53003 * 109.46735 * 294.31434 * 3 2 1 14 14 H 1.08993 * 113.40653 * 314.66260 * 13 3 2 15 15 C 1.55895 * 114.37952 * 181.03275 * 13 3 2 16 16 C 1.55969 * 102.90985 * 222.42540 * 15 13 3 17 17 S 1.83086 * 114.38178 * 88.29997 * 13 3 2 18 18 H 1.09002 * 109.47091 * 59.04992 * 1 2 3 19 19 H 1.09004 * 109.46886 * 299.05670 * 1 2 3 20 20 H 1.08998 * 109.47382 * 179.05497 * 1 2 3 21 21 H 1.08997 * 109.46913 * 119.99746 * 2 1 3 22 22 H 1.09000 * 109.47222 * 239.99691 * 2 1 3 23 23 H 0.96995 * 119.99425 * 180.02562 * 8 7 5 24 24 H 1.08998 * 110.82149 * 340.93481 * 15 13 3 25 25 H 1.09002 * 110.82050 * 103.86289 * 15 13 3 26 26 H 1.09003 * 114.34266 * 270.76184 * 16 15 13 27 27 H 1.09001 * 114.43248 * 137.57092 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5959 1.9850 0.8346 5 6 3.5405 1.4448 0.1408 6 1 4.1583 1.8038 -0.6691 7 6 4.1245 0.9886 1.3035 8 7 3.3780 0.7174 2.3518 9 14 5.9759 0.7561 1.3899 10 1 6.5829 1.1281 0.0866 11 1 6.5339 1.6202 2.4609 12 1 6.2827 -0.6654 1.6905 13 6 1.6501 2.1212 -1.3146 14 1 1.8390 1.5043 -2.1931 15 6 2.1380 3.5959 -1.4469 16 6 0.9010 4.3182 -2.0640 17 16 0.0034 2.9212 -1.2927 18 1 -0.3633 0.5285 -0.8814 19 1 -0.3633 0.4991 0.8984 20 1 -0.3634 -1.0275 -0.0169 21 1 1.8933 -0.5138 0.8900 22 1 1.8934 -0.5139 -0.8899 23 1 3.7889 0.3968 3.1698 24 1 2.3821 4.0124 -0.4696 25 1 2.9981 3.6612 -2.1133 26 1 0.8794 4.3201 -3.1538 27 1 0.6817 5.2914 -1.6249 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260634285.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = -17.849220 kcal Electronic energy + Delta-G solvation = -9841.252703 eV Core-core repulsion = 8110.556562 eV Total energy + Delta-G solvation = -1730.696141 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -37.93628 -34.97186 -33.59992 -29.72312 -26.88432 -24.69069 -22.28721 -21.21182 -18.54002 -17.49568 -16.62620 -15.67730 -15.17457 -14.82023 -14.26903 -14.00944 -13.63338 -13.20971 -13.03816 -12.75851 -12.64208 -12.43009 -12.20680 -11.83123 -11.51927 -11.04098 -10.93382 -10.42133 -9.98702 -8.60353 -8.08937 -6.19112 0.93761 1.38703 1.43057 1.47149 1.56577 2.46786 3.20632 3.78039 3.85932 4.11625 4.40925 4.52533 4.59363 4.67961 4.69443 4.87626 4.98688 5.14687 5.25941 5.35101 5.48424 5.67061 5.94588 5.96542 6.32286 6.91319 7.47259 8.98468 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.047756 B = 0.014032 C = 0.011645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.167730 B = 1994.991546 C = 2403.907365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.068 3.932 4 H 0.008 0.992 5 C -0.519 4.519 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.262 1.262 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.005 3.995 14 H 0.103 0.897 15 C -0.132 4.132 16 C -0.050 4.050 17 S -0.401 6.401 18 H 0.054 0.946 19 H 0.031 0.969 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.043 0.957 23 H 0.260 0.740 24 H 0.074 0.926 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 3.780 -7.698 8.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.048 3.952 4 H 0.026 0.974 5 C -0.559 4.559 6 H 0.081 0.919 7 C -0.185 4.185 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.186 1.186 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.123 4.123 14 H 0.121 0.879 15 C -0.170 4.170 16 C -0.197 4.197 17 S -0.176 6.176 18 H 0.073 0.927 19 H 0.050 0.950 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.142 0.858 27 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.890 3.463 -7.152 8.455 hybrid contribution 1.823 -0.120 0.246 1.844 sum -1.067 3.342 -6.906 7.746 Atomic orbital electron populations 1.21767 0.96869 1.00366 1.00530 1.21439 0.93861 0.99251 1.00002 1.18561 0.94962 0.91926 0.89715 0.97406 1.21369 0.91733 1.42112 1.00648 0.91932 1.25721 1.02060 0.95456 0.95216 1.70121 1.36931 1.46049 1.02714 0.85609 0.80867 0.77528 0.78279 1.18564 1.21101 1.20960 1.24581 0.87201 0.98188 1.02365 0.87882 1.23432 0.99079 0.92191 1.02337 1.24797 0.93878 0.97835 1.03239 1.88493 1.24738 1.22781 1.81542 0.92719 0.94967 0.92693 0.93698 0.93830 0.93128 0.90765 0.89845 0.85838 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 9.35 71.98 0.67 -5.04 15 2 C -0.11 -5.08 5.29 30.60 0.16 -4.91 15 3 C 0.07 3.35 1.50 -11.54 -0.02 3.33 15 4 H 0.01 0.44 7.99 -2.39 -0.02 0.43 15 5 C -0.52 -27.17 8.01 25.60 0.21 -26.96 15 6 H 0.06 3.14 7.66 -2.91 -0.02 3.12 15 7 C 0.01 0.78 5.16 84.65 0.44 1.22 15 8 N -0.92 -53.09 12.15 21.45 0.26 -52.83 15 9 Si 0.95 42.47 29.55 68.60 2.03 44.50 15 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 13 C 0.00 0.18 3.40 31.60 0.11 0.29 15 14 H 0.10 3.90 8.14 -2.39 -0.02 3.88 15 15 C -0.13 -4.51 5.95 32.62 0.19 -4.32 15 16 C -0.05 -1.37 9.09 73.01 0.66 -0.71 15 17 S -0.40 -15.02 21.32 -56.49 -1.20 -16.22 15 18 H 0.05 2.18 5.69 -2.39 -0.01 2.16 15 19 H 0.03 1.40 8.14 -2.38 -0.02 1.38 15 20 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 21 H 0.04 2.39 6.78 -2.39 -0.02 2.37 15 22 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 23 H 0.26 14.31 8.31 -92.71 -0.77 13.54 15 24 H 0.07 2.87 8.01 -2.39 -0.02 2.85 15 25 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 26 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 27 H 0.12 2.81 8.14 -2.39 -0.02 2.79 15 Total: -1.00 -58.88 233.50 4.63 -54.24 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.12 Total: 7.41 kcal Atomic # 6 Polarization: -39.53 SS G_CDS: 2.42 Total: -37.11 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: 0.26 Total: -52.83 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -15.02 SS G_CDS: -1.20 Total: -16.22 kcal Total: -58.88 4.63 -54.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260634285.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.395 kcal (2) G-P(sol) polarization free energy of solvation -58.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds