Wall clock time and date at job start Mon Mar 30 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32991 * 126.19354 * 2 1 4 4 C 1.31193 * 110.02448 * 180.11280 * 3 2 1 5 5 Cl 1.73599 * 125.25501 * 179.88798 * 4 3 2 6 6 N 1.35722 * 109.49724 * 359.62078 * 4 3 2 7 7 H 0.96991 * 126.53628 * 180.25024 * 6 4 3 8 8 C 1.38540 * 106.92681 * 0.22781 * 6 4 3 9 9 C 1.40032 * 127.02913 * 180.02562 * 8 6 4 10 10 H 1.08004 * 119.99543 * 179.97438 * 9 8 6 11 11 C 1.40036 * 119.99918 * 359.97438 * 9 8 6 12 12 N 1.30881 * 120.00256 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99681 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47144 * 89.99752 * 13 11 9 15 15 H 1.48501 * 109.46957 * 209.99573 * 13 11 9 16 16 H 1.48498 * 109.47292 * 329.99726 * 13 11 9 17 17 H 1.09000 * 109.47540 * 270.30501 * 1 2 3 18 18 H 1.08997 * 109.47132 * 30.30707 * 1 2 3 19 19 H 1.08996 * 109.47007 * 150.30304 * 1 2 3 20 20 H 0.96995 * 119.99930 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2923 1.0733 0.0000 4 6 3.5524 0.7079 -0.0024 5 17 4.9095 1.7904 -0.0061 6 7 3.6312 -0.6470 0.0043 7 1 4.4427 -1.1782 0.0077 8 6 2.3315 -1.1266 0.0060 9 6 1.9273 -2.4673 0.0130 10 1 0.8759 -2.7144 0.0140 11 6 2.8864 -3.4877 0.0186 12 7 4.1605 -3.1883 0.0168 13 14 2.3473 -5.2762 0.0271 14 1 2.2052 -5.7570 -1.3707 15 1 3.3650 -6.0966 0.7317 16 1 1.0431 -5.3968 0.7270 17 1 -0.3634 0.0055 1.0276 18 1 -0.3633 0.8872 -0.5186 19 1 -0.3633 -0.8927 -0.5091 20 1 4.8248 -3.8950 0.0203 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260746350.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:44 Heat of formation + Delta-G solvation = 0.986749 kcal Electronic energy + Delta-G solvation = -9247.916233 eV Core-core repulsion = 7276.619737 eV Total energy + Delta-G solvation = -1971.296496 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.83989 -37.51541 -35.71851 -33.23506 -31.68246 -28.80845 -25.75268 -22.34477 -20.62496 -19.65607 -17.72874 -16.60734 -15.75378 -15.44619 -14.83331 -13.65180 -13.54947 -13.40282 -13.06515 -12.86885 -12.68764 -12.40172 -12.20006 -11.94263 -11.32260 -10.52518 -10.34627 -9.07172 -8.88829 -6.38951 0.89064 1.20253 1.43356 1.58191 1.77451 2.19110 2.32520 3.22011 3.25237 4.47446 4.79188 5.10776 5.14829 5.24234 5.30701 5.59870 5.80217 6.38097 6.55025 6.72979 7.25212 7.60861 8.21151 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.049947 B = 0.014097 C = 0.011060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.459194 B = 1985.693244 C = 2531.008561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.176 4.176 3 N -0.471 5.471 4 C 0.111 3.889 5 Cl 0.001 6.999 6 N -0.564 5.564 7 H 0.425 0.575 8 C 0.188 3.812 9 C -0.458 4.458 10 H 0.111 0.889 11 C 0.027 3.973 12 N -0.864 5.864 13 Si 1.010 2.990 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.252 1.252 17 H 0.051 0.949 18 H 0.055 0.945 19 H 0.066 0.934 20 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 -2.268 -0.033 2.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.306 4.306 3 N -0.195 5.195 4 C -0.168 4.168 5 Cl 0.028 6.972 6 N -0.186 5.186 7 H 0.272 0.728 8 C 0.071 3.929 9 C -0.492 4.492 10 H 0.128 0.872 11 C -0.185 4.185 12 N -0.495 5.495 13 Si 0.830 3.170 14 H -0.188 1.188 15 H -0.196 1.196 16 H -0.176 1.176 17 H 0.070 0.930 18 H 0.074 0.926 19 H 0.085 0.915 20 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.249 -1.333 -0.028 1.356 hybrid contribution 1.150 -1.286 0.011 1.725 sum 0.901 -2.619 -0.016 2.769 Atomic orbital electron populations 1.19544 0.86721 1.01205 1.00598 1.21314 0.96572 0.86955 1.25792 1.68989 0.99192 1.33145 1.18126 1.22468 0.89112 0.81267 1.23999 1.98247 1.39730 1.61165 1.98076 1.43681 1.09988 1.04553 1.60329 0.72828 1.19269 0.81726 0.95041 0.96883 1.19174 0.96293 0.87721 1.46041 0.87153 1.26989 0.93872 1.07217 0.90453 1.68937 1.02762 1.38240 1.39574 0.84733 0.79308 0.73522 0.79431 1.18753 1.19568 1.17573 0.93034 0.92648 0.91530 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.95 10.23 71.24 0.73 -0.22 14 2 C -0.18 -9.12 7.24 42.71 0.31 -8.82 14 3 N -0.47 -25.08 11.18 -175.52 -1.96 -27.05 14 4 C 0.11 5.61 8.83 179.84 1.59 7.20 14 5 Cl 0.00 0.03 29.33 -2.72 -0.08 -0.05 14 6 N -0.56 -29.61 5.86 -181.14 -1.06 -30.67 14 7 H 0.42 21.76 6.45 -92.71 -0.60 21.16 14 8 C 0.19 10.11 6.75 38.85 0.26 10.37 14 9 C -0.46 -22.88 9.09 23.14 0.21 -22.67 14 10 H 0.11 5.11 7.35 -2.91 -0.02 5.08 14 11 C 0.03 1.22 5.50 85.27 0.47 1.69 14 12 N -0.86 -41.15 10.78 21.85 0.24 -40.91 14 13 Si 1.01 34.98 29.56 68.60 2.03 37.01 14 14 H -0.26 -8.86 7.11 99.48 0.71 -8.15 14 15 H -0.27 -9.06 7.11 99.48 0.71 -8.35 14 16 H -0.25 -8.41 7.11 99.48 0.71 -7.70 14 17 H 0.05 1.98 8.14 -2.39 -0.02 1.96 14 18 H 0.05 2.13 8.14 -2.39 -0.02 2.11 14 19 H 0.07 2.54 7.60 -2.39 -0.02 2.52 14 20 H 0.30 12.80 8.30 -92.71 -0.77 12.03 14 Total: -1.00 -56.85 201.65 3.40 -53.44 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.67 Total: 20.66 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.57 Total: -12.44 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -2.79 Total: -98.63 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -56.85 3.40 -53.44 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260746350.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.431 kcal (2) G-P(sol) polarization free energy of solvation -56.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds