Wall clock time and date at job start Mon Mar 30 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31584 * 1 3 3 Si 1.86800 * 119.99580 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00394 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99883 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00490 * 3 2 1 7 7 C 1.38628 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00236 * 359.97438 * 7 2 1 9 9 O 1.34923 * 120.00174 * 180.02562 * 7 2 1 10 10 C 1.42904 * 117.00059 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47468 * 29.99971 * 10 9 7 12 12 C 1.53002 * 109.47076 * 269.99912 * 10 9 7 13 13 C 1.53001 * 109.47317 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47124 * 59.99869 * 13 12 10 15 15 C 1.53002 * 109.47130 * 300.00245 * 14 13 12 16 16 H 1.08998 * 109.46950 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47139 * 300.00205 * 15 14 13 18 18 C 1.53001 * 109.47317 * 59.99873 * 15 14 13 19 19 H 0.96993 * 120.00344 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46895 * 299.99815 * 12 10 9 21 21 H 1.08998 * 109.46950 * 60.00106 * 12 10 9 22 22 H 1.08990 * 109.47281 * 179.97438 * 13 12 10 23 23 H 1.08999 * 109.46640 * 300.00399 * 13 12 10 24 24 H 1.09002 * 109.47033 * 59.99758 * 14 13 12 25 25 H 1.08996 * 109.46977 * 180.02562 * 14 13 12 26 26 H 0.96692 * 113.99631 * 299.99570 * 17 15 14 27 27 H 1.08991 * 109.47551 * 179.97438 * 18 15 14 28 28 H 1.09008 * 109.46779 * 59.99829 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0464 1.4001 5 1 3.5473 1.4404 -0.7000 6 1 1.4471 2.6527 -0.6999 7 6 2.0091 -1.2005 -0.0005 8 1 1.4692 -2.1359 -0.0005 9 8 3.3583 -1.2004 0.0000 10 6 4.0071 -2.4737 0.0000 11 1 3.3794 -3.2014 -0.5142 12 6 4.2382 -2.9284 1.4425 13 6 4.9334 -4.2913 1.4425 14 6 6.2784 -4.1778 0.7219 15 6 6.0474 -3.7231 -0.7206 16 1 7.0055 -3.6418 -1.2337 17 8 5.2247 -4.6774 -1.3949 18 6 5.3521 -2.3602 -0.7206 19 1 -0.4850 0.8400 -0.0004 20 1 4.8660 -2.2007 1.9567 21 1 3.2800 -3.0089 1.9559 22 1 5.0984 -4.6150 2.4701 23 1 4.3060 -5.0192 0.9281 24 1 6.9058 -3.4498 1.2362 25 1 6.7734 -5.1488 0.7216 26 1 5.6039 -5.5660 -1.4332 27 1 5.1879 -2.0360 -1.7482 28 1 5.9796 -1.6322 -0.2062 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797718.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:27 Heat of formation + Delta-G solvation = -129.740008 kcal Electronic energy + Delta-G solvation = -11874.082622 eV Core-core repulsion = 9695.781662 eV Total energy + Delta-G solvation = -2178.300961 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.30464 -38.06613 -35.48873 -34.02037 -31.27329 -30.22852 -26.54243 -23.41090 -22.99711 -20.86789 -19.70870 -18.04708 -17.47444 -16.56565 -15.62448 -15.54081 -15.25718 -15.01260 -14.26347 -13.97872 -13.41370 -13.38050 -13.10729 -12.67837 -12.46926 -12.21716 -11.84969 -11.74246 -11.47200 -11.29172 -11.12274 -10.59936 -10.25379 -8.27536 -5.96870 1.35793 1.40542 1.59156 2.43414 3.04501 3.29878 3.43393 3.83054 3.96493 4.16931 4.29455 4.36841 4.46862 4.58344 4.66445 4.78487 5.01464 5.05312 5.13601 5.24039 5.27630 5.43021 5.47961 5.62033 6.15683 7.03699 7.11522 7.82893 8.89106 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.061793 B = 0.011150 C = 0.010899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.018896 B = 2510.559237 C = 2568.465907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.020 4.020 3 Si 0.980 3.020 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.278 1.278 7 C -0.351 4.351 8 H 0.039 0.961 9 O -0.346 6.346 10 C 0.102 3.898 11 H 0.024 0.976 12 C -0.136 4.136 13 C -0.106 4.106 14 C -0.143 4.143 15 C 0.113 3.887 16 H 0.087 0.913 17 O -0.586 6.586 18 C -0.111 4.111 19 H 0.274 0.726 20 H 0.066 0.934 21 H 0.034 0.966 22 H 0.078 0.922 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.392 0.608 27 H 0.053 0.947 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.880 -7.870 1.082 17.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.212 4.212 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.187 1.187 6 H -0.204 1.204 7 C -0.430 4.430 8 H 0.057 0.943 9 O -0.262 6.262 10 C 0.044 3.956 11 H 0.043 0.957 12 C -0.174 4.174 13 C -0.144 4.144 14 C -0.181 4.181 15 C 0.055 3.945 16 H 0.105 0.895 17 O -0.394 6.394 18 C -0.149 4.149 19 H 0.083 0.917 20 H 0.085 0.915 21 H 0.053 0.947 22 H 0.097 0.903 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.115 0.885 26 H 0.242 0.758 27 H 0.072 0.928 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 15.499 -7.100 1.016 17.078 hybrid contribution -0.325 -0.031 0.063 0.333 sum 15.174 -7.131 1.079 16.801 Atomic orbital electron populations 1.69810 1.07001 1.28424 1.55250 1.25276 0.95889 1.02140 0.97936 0.85055 0.78479 0.77414 0.78686 1.19587 1.18701 1.20385 1.20354 0.80151 0.93822 1.48673 0.94272 1.85151 1.18388 1.28914 1.93748 1.21910 0.93398 0.84858 0.95443 0.95730 1.22015 0.99966 0.98663 0.96749 1.21385 0.96798 0.95059 1.01140 1.22249 0.96982 1.03529 0.95312 1.21781 0.92929 0.87166 0.92653 0.89528 1.86595 1.49959 1.23560 1.79320 1.21666 0.95233 0.97676 1.00307 0.91717 0.91502 0.94701 0.90302 0.92551 0.89829 0.88525 0.75831 0.92768 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.58 13.96 21.61 0.30 -62.28 15 2 C -0.02 -1.26 5.49 84.82 0.47 -0.80 15 3 Si 0.98 49.56 28.62 68.60 1.96 51.53 15 4 H -0.27 -13.06 7.11 99.48 0.71 -12.36 15 5 H -0.26 -13.04 7.11 99.48 0.71 -12.34 15 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 15 7 C -0.35 -22.35 10.23 67.91 0.69 -21.65 15 8 H 0.04 2.71 7.88 -2.91 -0.02 2.68 15 9 O -0.35 -19.34 8.25 -81.92 -0.68 -20.02 15 10 C 0.10 4.56 2.51 30.60 0.08 4.64 15 11 H 0.02 1.23 7.34 -2.39 -0.02 1.21 15 12 C -0.14 -5.16 5.54 30.60 0.17 -4.99 15 13 C -0.11 -2.89 5.78 30.60 0.18 -2.71 15 14 C -0.14 -2.92 5.64 30.60 0.17 -2.75 15 15 C 0.11 2.79 3.77 30.60 0.12 2.91 15 16 H 0.09 1.61 8.14 -2.39 -0.02 1.59 15 17 O -0.59 -15.78 11.97 -148.98 -1.78 -17.57 15 18 C -0.11 -3.87 5.31 30.60 0.16 -3.71 15 19 H 0.27 16.55 8.31 -92.71 -0.77 15.77 15 20 H 0.07 2.40 8.14 -2.39 -0.02 2.38 15 21 H 0.03 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.06 1.64 7.68 -2.39 -0.02 1.62 15 24 H 0.08 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.10 1.35 8.14 -2.39 -0.02 1.33 15 26 H 0.39 6.14 9.08 -74.06 -0.67 5.47 15 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 15 28 H 0.09 2.84 8.14 -2.38 -0.02 2.82 15 Total: -1.00 -75.36 233.83 2.30 -73.05 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 0.46 Total: 4.35 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 2.03 Total: -29.07 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.30 Total: -62.28 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -2.46 Total: -37.58 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.96 Total: 51.53 kcal Total: -75.36 2.30 -73.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797718.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.686 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds