Wall clock time and date at job start Mon Mar 30 2020 02:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86805 * 119.99941 * 2 1 4 4 H 1.48489 * 109.47249 * 270.00023 * 3 2 1 5 5 H 1.48503 * 109.47173 * 30.00078 * 3 2 1 6 6 H 1.48504 * 109.47100 * 149.99849 * 3 2 1 7 7 C 1.38627 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00398 * 180.02562 * 7 2 1 9 9 O 1.34932 * 120.00207 * 0.02562 * 7 2 1 10 10 C 1.42895 * 117.00082 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47064 * 30.00787 * 10 9 7 12 12 C 1.52997 * 109.47503 * 270.00085 * 10 9 7 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 10 15 15 C 1.53002 * 109.46891 * 299.99597 * 14 13 12 16 16 H 1.09001 * 109.47142 * 300.00176 * 15 14 13 17 17 O 1.42905 * 109.47208 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46978 * 60.00410 * 15 14 13 19 19 H 0.97007 * 120.00310 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47153 * 60.00043 * 12 10 9 21 21 H 1.09001 * 109.46832 * 300.00234 * 12 10 9 22 22 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 23 23 H 1.09001 * 109.47194 * 299.99650 * 13 12 10 24 24 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 25 25 H 1.09004 * 109.47108 * 179.97438 * 14 13 12 26 26 H 0.96697 * 113.99519 * 59.99573 * 17 15 14 27 27 H 1.09001 * 109.47375 * 59.99908 * 18 15 14 28 28 H 1.09000 * 109.47140 * 179.97438 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0465 -1.4000 5 1 1.4472 2.6527 0.7001 6 1 3.5474 1.4402 0.7001 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2006 0.0010 9 8 1.3343 -2.3691 0.0005 10 6 2.1126 -3.5675 0.0005 11 1 3.0568 -3.3875 0.5145 12 6 2.3905 -3.9953 -1.4419 13 6 3.2232 -5.2788 -1.4418 14 6 2.4528 -6.3866 -0.7208 15 6 2.1750 -5.9589 0.7218 16 1 3.1193 -5.7792 1.2357 17 8 1.4559 -6.9938 1.3955 18 6 1.3422 -4.6754 0.7217 19 1 -0.4851 0.8401 0.0004 20 1 2.9390 -3.2059 -1.9558 21 1 1.4462 -4.1753 -1.9557 22 1 3.4215 -5.5833 -2.4695 23 1 4.1676 -5.0992 -0.9278 24 1 1.5086 -6.5663 -1.2346 25 1 3.0459 -7.3011 -0.7211 26 1 1.9255 -7.8383 1.4336 27 1 0.3979 -4.8551 0.2077 28 1 1.1439 -4.3709 1.7493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797720.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:29 Heat of formation + Delta-G solvation = -132.519502 kcal Electronic energy + Delta-G solvation = -11705.189496 eV Core-core repulsion = 9526.768007 eV Total energy + Delta-G solvation = -2178.421489 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.17424 -37.99986 -35.87536 -33.80080 -31.14891 -29.92669 -26.69826 -23.32922 -23.11546 -20.91562 -19.62462 -18.37610 -17.22519 -16.33101 -15.93267 -15.49100 -15.16791 -14.80133 -14.51319 -13.87277 -13.54277 -13.26832 -13.00063 -12.64174 -12.35883 -12.10447 -11.94752 -11.69289 -11.54344 -11.28015 -11.04975 -10.69114 -10.12015 -8.17289 -5.86707 1.38831 1.45991 1.55061 2.31918 3.10928 3.16604 3.72734 3.76027 4.03866 4.15553 4.26822 4.35785 4.48864 4.52581 4.58505 4.70299 5.02000 5.10032 5.12618 5.21219 5.22737 5.23695 5.42810 5.49955 6.21586 6.96019 7.25660 8.08045 9.08159 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.069153 B = 0.009746 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.803845 B = 2872.271384 C = 3065.368622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.047 4.047 3 Si 1.006 2.994 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.372 4.372 8 H 0.074 0.926 9 O -0.333 6.333 10 C 0.093 3.907 11 H 0.041 0.959 12 C -0.136 4.136 13 C -0.105 4.105 14 C -0.142 4.142 15 C 0.118 3.882 16 H 0.069 0.931 17 O -0.583 6.583 18 C -0.106 4.106 19 H 0.260 0.740 20 H 0.050 0.950 21 H 0.047 0.953 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.397 0.603 27 H 0.051 0.949 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.816 -11.622 -1.180 14.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.239 4.239 3 Si 0.828 3.172 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.181 1.181 7 C -0.451 4.451 8 H 0.091 0.909 9 O -0.249 6.249 10 C 0.035 3.965 11 H 0.059 0.941 12 C -0.174 4.174 13 C -0.143 4.143 14 C -0.179 4.179 15 C 0.060 3.940 16 H 0.086 0.914 17 O -0.392 6.392 18 C -0.144 4.144 19 H 0.069 0.931 20 H 0.069 0.931 21 H 0.066 0.934 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.119 0.881 26 H 0.247 0.753 27 H 0.070 0.930 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.063 -11.074 -1.111 13.743 hybrid contribution 0.443 0.563 -0.042 0.718 sum 8.506 -10.511 -1.152 13.570 Atomic orbital electron populations 1.70213 1.07714 1.27171 1.53771 1.26264 0.96746 1.02139 0.98745 0.84745 0.77632 0.76135 0.78653 1.19493 1.20507 1.18138 1.21388 0.90762 0.83477 1.49452 0.90866 1.85607 1.34304 1.11887 1.93100 1.21919 0.93349 0.85959 0.95313 0.94072 1.22032 1.00072 0.98424 0.96864 1.21417 0.98158 0.92848 1.01842 1.22227 1.01306 0.99454 0.94954 1.21585 0.93482 0.86237 0.92746 0.91359 1.86490 1.49303 1.24065 1.79389 1.21426 0.99281 0.93807 0.99854 0.93136 0.93087 0.93366 0.89606 0.90806 0.92061 0.88087 0.75252 0.93049 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.03 13.67 21.61 0.30 -61.73 15 2 C -0.05 -2.81 5.49 84.82 0.47 -2.35 15 3 Si 1.01 45.96 29.55 68.60 2.03 47.99 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 15 7 C -0.37 -22.52 9.77 67.91 0.66 -21.86 15 8 H 0.07 4.09 7.64 -2.91 -0.02 4.07 15 9 O -0.33 -20.14 9.43 -82.01 -0.77 -20.91 15 10 C 0.09 4.22 2.65 30.60 0.08 4.30 15 11 H 0.04 1.81 7.80 -2.39 -0.02 1.79 15 12 C -0.14 -5.19 5.54 30.59 0.17 -5.02 15 13 C -0.11 -2.74 5.92 30.59 0.18 -2.56 15 14 C -0.14 -3.34 5.55 30.59 0.17 -3.17 15 15 C 0.12 3.39 3.47 30.59 0.11 3.50 15 16 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 17 O -0.58 -15.61 13.32 -148.98 -1.98 -17.60 15 18 C -0.11 -4.29 5.22 30.60 0.16 -4.13 15 19 H 0.26 15.87 8.31 -92.70 -0.77 15.10 15 20 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 24 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.10 1.61 8.14 -2.38 -0.02 1.59 15 26 H 0.40 5.88 9.08 -74.06 -0.67 5.21 15 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 15 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 15 Total: -1.00 -75.63 237.03 2.02 -73.60 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.46 Total: 9.94 kcal Atomic # 6 Polarization: -33.28 SS G_CDS: 2.00 Total: -31.29 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: 0.30 Total: -61.73 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -2.76 Total: -38.51 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -75.63 2.02 -73.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797720.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.917 kcal (2) G-P(sol) polarization free energy of solvation -75.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds