Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86802 * 119.99590 * 2 1 4 4 H 1.48507 * 109.46680 * 239.99467 * 3 2 1 5 5 H 1.48498 * 109.47494 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47284 * 119.99765 * 3 2 1 7 7 C 1.38631 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.42905 * 116.99831 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47108 * 329.99688 * 10 9 7 12 12 C 1.53002 * 109.47208 * 89.99756 * 10 9 7 13 13 C 1.52996 * 109.46891 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 O 1.42895 * 109.47503 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46921 * 209.99510 * 10 9 7 19 19 H 0.97000 * 119.99637 * 0.02562 * 1 2 3 20 20 H 1.08992 * 109.47056 * 59.99782 * 12 10 9 21 21 H 1.09004 * 109.47006 * 299.99899 * 12 10 9 22 22 H 1.09004 * 109.47368 * 179.97438 * 13 12 10 23 23 H 1.09001 * 109.47372 * 59.99964 * 13 12 10 24 24 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 25 25 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 26 26 H 0.96709 * 113.99981 * 300.00021 * 17 15 14 27 27 H 1.09001 * 109.47375 * 300.00014 * 18 10 9 28 28 H 1.09000 * 109.47140 * 60.00032 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1037 1.6964 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1035 1.6966 1.2125 7 6 2.0091 -1.2006 0.0005 8 1 3.0891 -1.2005 0.0001 9 8 1.3345 -2.3690 0.0005 10 6 2.1128 -3.5675 0.0005 11 1 3.0571 -3.3875 -0.5133 12 6 2.3907 -3.9952 1.4430 13 6 3.2245 -5.2780 1.4430 14 6 2.4551 -6.3864 0.7216 15 6 2.1772 -5.9588 -0.7208 16 1 3.1214 -5.7783 -1.2347 17 8 1.4581 -6.9937 -1.3944 18 6 1.3428 -4.6756 -0.7206 19 1 -0.4849 0.8401 -0.0004 20 1 1.4465 -4.1752 1.9569 21 1 2.9392 -3.2057 1.9568 22 1 3.4229 -5.5825 2.4706 23 1 4.1688 -5.0976 0.9292 24 1 3.0490 -7.3005 0.7220 25 1 1.5109 -6.5669 1.2354 26 1 1.9277 -7.8382 -1.4326 27 1 0.3986 -4.8557 -0.2067 28 1 1.1449 -4.3710 -1.7483 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260797722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = -106.401705 kcal Electronic energy + Delta-G solvation = -11703.920238 eV Core-core repulsion = 9526.631302 eV Total energy + Delta-G solvation = -2177.288936 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.71115 -36.29518 -34.37486 -31.64408 -29.62571 -28.47492 -24.47700 -21.94440 -21.63842 -19.44028 -17.50595 -17.03220 -15.43529 -14.70631 -14.21358 -14.04005 -13.76294 -13.17849 -12.76771 -12.21055 -12.18138 -11.37060 -11.28093 -10.93425 -10.67821 -10.59264 -10.39910 -10.22666 -9.90850 -9.73175 -9.30175 -9.00642 -7.94243 -5.91366 -3.54983 3.33404 3.34986 3.38506 4.22436 4.47429 5.00915 5.02310 5.30288 5.39680 5.55580 5.64003 5.82255 5.88613 5.96348 6.02261 6.11513 6.31045 6.37529 6.58567 6.65764 6.85128 6.98395 7.05928 7.49515 7.82048 8.46577 9.51741 10.20994 11.29631 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.069142 B = 0.009746 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.865452 B = 2872.255868 C = 3065.319927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.022 3.978 3 Si 0.924 3.076 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.360 4.360 8 H 0.062 0.938 9 O -0.285 6.285 10 C 0.104 3.896 11 H 0.038 0.962 12 C -0.141 4.141 13 C -0.114 4.114 14 C -0.149 4.149 15 C 0.108 3.892 16 H 0.052 0.948 17 O -0.568 6.568 18 C -0.107 4.107 19 H 0.258 0.742 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.371 0.629 27 H 0.071 0.929 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.606 -10.636 0.891 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.176 4.176 3 Si 0.751 3.249 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.439 4.439 8 H 0.079 0.921 9 O -0.200 6.200 10 C 0.044 3.956 11 H 0.057 0.943 12 C -0.179 4.179 13 C -0.152 4.152 14 C -0.187 4.187 15 C 0.050 3.950 16 H 0.070 0.930 17 O -0.373 6.373 18 C -0.145 4.145 19 H 0.068 0.932 20 H 0.082 0.918 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.217 0.783 27 H 0.090 0.910 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.817 -10.030 0.829 11.624 hybrid contribution 1.164 0.373 0.154 1.232 sum 6.982 -9.657 0.983 11.957 Atomic orbital electron populations 1.70019 1.05388 1.25966 1.51860 1.24948 0.95646 0.97686 0.99322 0.86061 0.78538 0.81904 0.78356 1.20412 1.20890 1.20422 1.20828 0.90054 0.82764 1.50252 0.92057 1.85682 1.31523 1.10135 1.92624 1.21568 0.93616 0.87522 0.92873 0.94349 1.22130 0.99990 0.96058 0.99751 1.21444 0.98597 0.95387 0.99732 1.22264 1.01092 0.98247 0.97058 1.21801 0.94349 0.88052 0.90816 0.93005 1.86556 1.48460 1.22779 1.79492 1.21475 0.99350 0.91669 1.01968 0.93193 0.91772 0.91643 0.92171 0.92307 0.92440 0.91163 0.78341 0.91019 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.35 13.68 55.48 0.76 -27.60 15 2 C 0.02 0.66 5.49 -17.51 -0.10 0.56 15 3 Si 0.92 22.29 29.55 -169.99 -5.02 17.27 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 7 C -0.36 -10.67 9.77 30.88 0.30 -10.36 15 8 H 0.06 1.70 7.64 -52.49 -0.40 1.30 15 9 O -0.28 -8.28 9.43 -16.49 -0.16 -8.43 15 10 C 0.10 2.31 2.65 -26.73 -0.07 2.24 15 11 H 0.04 0.84 7.80 -51.93 -0.41 0.44 15 12 C -0.14 -2.71 5.54 -26.73 -0.15 -2.86 15 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 15 14 C -0.15 -2.02 5.54 -26.73 -0.15 -2.17 15 15 C 0.11 1.67 3.47 -26.70 -0.09 1.58 15 16 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 17 O -0.57 -8.29 13.32 -35.23 -0.47 -8.76 15 18 C -0.11 -2.12 5.23 -26.70 -0.14 -2.26 15 19 H 0.26 7.68 8.31 -40.82 -0.34 7.34 15 20 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 21 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 22 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.37 3.45 9.08 45.56 0.41 3.86 15 27 H 0.07 1.49 8.14 -51.93 -0.42 1.07 15 28 H 0.07 1.47 8.14 -51.93 -0.42 1.05 15 LS Contribution 237.03 15.07 3.57 3.57 Total: -1.00 -33.73 237.03 -5.20 -38.93 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -3.33 Total: 0.11 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -0.55 Total: -15.09 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.76 Total: -27.60 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.62 Total: -17.20 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -33.73 -5.20 -38.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.467 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds