Wall clock time and date at job start Mon Mar 30 2020 02:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31592 * 1 3 3 Si 1.86802 * 119.99590 * 2 1 4 4 H 1.48507 * 109.46680 * 239.99467 * 3 2 1 5 5 H 1.48498 * 109.47494 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47284 * 119.99765 * 3 2 1 7 7 C 1.38631 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.42905 * 116.99831 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.47108 * 329.99688 * 10 9 7 12 12 C 1.53002 * 109.47208 * 89.99756 * 10 9 7 13 13 C 1.52996 * 109.46891 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47328 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 17 17 O 1.42895 * 109.47503 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46921 * 209.99510 * 10 9 7 19 19 H 0.97000 * 119.99637 * 0.02562 * 1 2 3 20 20 H 1.08992 * 109.47056 * 59.99782 * 12 10 9 21 21 H 1.09004 * 109.47006 * 299.99899 * 12 10 9 22 22 H 1.09004 * 109.47368 * 179.97438 * 13 12 10 23 23 H 1.09001 * 109.47372 * 59.99964 * 13 12 10 24 24 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 25 25 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 26 26 H 0.96709 * 113.99981 * 300.00021 * 17 15 14 27 27 H 1.09001 * 109.47375 * 300.00014 * 18 10 9 28 28 H 1.09000 * 109.47140 * 60.00032 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.1037 1.6964 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1035 1.6966 1.2125 7 6 2.0091 -1.2006 0.0005 8 1 3.0891 -1.2005 0.0001 9 8 1.3345 -2.3690 0.0005 10 6 2.1128 -3.5675 0.0005 11 1 3.0571 -3.3875 -0.5133 12 6 2.3907 -3.9952 1.4430 13 6 3.2245 -5.2780 1.4430 14 6 2.4551 -6.3864 0.7216 15 6 2.1772 -5.9588 -0.7208 16 1 3.1214 -5.7783 -1.2347 17 8 1.4581 -6.9937 -1.3944 18 6 1.3428 -4.6756 -0.7206 19 1 -0.4849 0.8401 -0.0004 20 1 1.4465 -4.1752 1.9569 21 1 2.9392 -3.2057 1.9568 22 1 3.4229 -5.5825 2.4706 23 1 4.1688 -5.0976 0.9292 24 1 3.0490 -7.3005 0.7220 25 1 1.5109 -6.5669 1.2354 26 1 1.9277 -7.8382 -1.4326 27 1 0.3986 -4.8557 -0.2067 28 1 1.1449 -4.3710 -1.7483 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797722.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:30 Heat of formation + Delta-G solvation = -132.414734 kcal Electronic energy + Delta-G solvation = -11705.048248 eV Core-core repulsion = 9526.631302 eV Total energy + Delta-G solvation = -2178.416946 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.17236 -37.99843 -35.87463 -33.79786 -31.14704 -29.92596 -26.69485 -23.32913 -23.11420 -20.91565 -19.62261 -18.37462 -17.22181 -16.33109 -15.93499 -15.49034 -15.16815 -14.80137 -14.50867 -13.86944 -13.54224 -13.26526 -12.99279 -12.63264 -12.35560 -12.12992 -11.94670 -11.69770 -11.54230 -11.27185 -11.05140 -10.69155 -10.11642 -8.17012 -5.86517 1.38814 1.47218 1.54194 2.32209 3.10958 3.16781 3.72718 3.76041 4.03836 4.15552 4.26871 4.35791 4.48822 4.52491 4.58520 4.70310 5.01983 5.10018 5.12617 5.21203 5.22624 5.23670 5.42808 5.49969 6.21606 6.96014 7.25788 8.08152 9.08195 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.069142 B = 0.009746 C = 0.009132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.865452 B = 2872.255868 C = 3065.319927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.046 4.046 3 Si 1.006 2.994 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.373 4.373 8 H 0.074 0.926 9 O -0.333 6.333 10 C 0.093 3.907 11 H 0.041 0.959 12 C -0.136 4.136 13 C -0.105 4.105 14 C -0.142 4.142 15 C 0.118 3.882 16 H 0.069 0.931 17 O -0.583 6.583 18 C -0.106 4.106 19 H 0.260 0.740 20 H 0.048 0.952 21 H 0.050 0.950 22 H 0.085 0.915 23 H 0.073 0.927 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.397 0.603 27 H 0.051 0.949 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.809 -11.603 1.191 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.239 4.239 3 Si 0.828 3.172 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.091 0.909 9 O -0.249 6.249 10 C 0.035 3.965 11 H 0.059 0.941 12 C -0.174 4.174 13 C -0.143 4.143 14 C -0.179 4.179 15 C 0.060 3.940 16 H 0.087 0.913 17 O -0.392 6.392 18 C -0.144 4.144 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.069 0.931 22 H 0.104 0.896 23 H 0.092 0.908 24 H 0.119 0.881 25 H 0.079 0.921 26 H 0.247 0.753 27 H 0.070 0.930 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.051 -11.052 1.127 13.720 hybrid contribution 0.453 0.559 0.031 0.720 sum 8.504 -10.493 1.158 13.556 Atomic orbital electron populations 1.70212 1.07710 1.27239 1.53698 1.26270 0.96746 1.02143 0.98716 0.84814 0.77199 0.75821 0.79348 1.18806 1.20536 1.18695 1.21354 0.90768 0.83493 1.49586 0.90867 1.85606 1.34287 1.11879 1.93111 1.21922 0.93354 0.85965 0.95309 0.94070 1.22030 1.00062 0.98422 0.96869 1.21417 0.98155 0.92853 1.01840 1.22228 1.01311 0.99448 0.94954 1.21595 0.93479 0.86231 0.92745 0.91348 1.86491 1.49290 1.24066 1.79396 1.21437 0.99276 0.93808 0.99844 0.93137 0.93360 0.93116 0.89610 0.90804 0.88086 0.92059 0.75251 0.93042 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.05 13.68 21.61 0.30 -61.75 15 2 C -0.05 -2.80 5.49 84.82 0.47 -2.33 15 3 Si 1.01 45.93 29.55 68.60 2.03 47.96 15 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 15 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 15 7 C -0.37 -22.61 9.77 67.91 0.66 -21.94 15 8 H 0.07 4.09 7.64 -2.91 -0.02 4.06 15 9 O -0.33 -20.14 9.43 -81.93 -0.77 -20.91 15 10 C 0.09 4.22 2.65 30.59 0.08 4.30 15 11 H 0.04 1.81 7.80 -2.39 -0.02 1.79 15 12 C -0.14 -5.19 5.54 30.59 0.17 -5.02 15 13 C -0.11 -2.74 5.92 30.59 0.18 -2.56 15 14 C -0.14 -3.34 5.54 30.59 0.17 -3.18 15 15 C 0.12 3.39 3.47 30.61 0.11 3.50 15 16 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 17 O -0.58 -15.61 13.32 -148.98 -1.98 -17.60 15 18 C -0.11 -4.29 5.23 30.61 0.16 -4.13 15 19 H 0.26 15.91 8.31 -92.71 -0.77 15.14 15 20 H 0.05 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.05 2.04 8.14 -2.38 -0.02 2.02 15 22 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 23 H 0.07 1.75 8.14 -2.39 -0.02 1.73 15 24 H 0.10 1.61 8.14 -2.39 -0.02 1.59 15 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 26 H 0.40 5.88 9.08 -74.05 -0.67 5.21 15 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 28 H 0.05 2.08 8.14 -2.39 -0.02 2.06 15 Total: -1.00 -75.62 237.03 2.03 -73.60 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.46 Total: 10.07 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 2.00 Total: -31.37 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.30 Total: -61.75 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -2.76 Total: -38.51 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -75.62 2.03 -73.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797722.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.818 kcal (2) G-P(sol) polarization free energy of solvation -75.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds