Wall clock time and date at job start Mon Mar 30 2020 02:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86802 * 119.99569 * 2 1 4 4 H 1.48497 * 109.46935 * 269.99347 * 3 2 1 5 5 H 1.48496 * 109.47631 * 29.99936 * 3 2 1 6 6 H 1.48507 * 109.46686 * 149.99973 * 3 2 1 7 7 C 1.38633 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99661 * 180.02562 * 7 2 1 9 9 O 1.34922 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.42895 * 117.00237 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46880 * 329.99882 * 10 9 7 12 12 C 1.52997 * 109.47503 * 90.00006 * 10 9 7 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47233 * 299.99657 * 13 12 10 15 15 C 1.52997 * 109.46817 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47289 * 180.02562 * 15 14 13 17 17 O 1.42895 * 109.47269 * 60.00152 * 15 14 13 18 18 C 1.52999 * 109.47162 * 210.00503 * 10 9 7 19 19 H 0.97000 * 119.99673 * 0.02562 * 1 2 3 20 20 H 1.09002 * 109.47153 * 60.00043 * 12 10 9 21 21 H 1.09001 * 109.46832 * 300.00234 * 12 10 9 22 22 H 1.08992 * 109.47399 * 59.99823 * 13 12 10 23 23 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 24 24 H 1.08993 * 109.47662 * 180.02562 * 14 13 12 25 25 H 1.09002 * 109.47075 * 300.00932 * 14 13 12 26 26 H 0.96698 * 114.00157 * 60.00102 * 17 15 14 27 27 H 1.09000 * 109.47486 * 59.99398 * 18 10 9 28 28 H 1.09002 * 109.46716 * 299.99480 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4974 2.0464 -1.4001 5 1 1.4473 2.6528 0.7000 6 1 3.5474 1.4402 0.7001 7 6 2.0091 -1.2006 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3345 -2.3691 0.0016 10 6 2.1127 -3.5675 0.0027 11 1 3.0570 -3.3879 -0.5114 12 6 2.3905 -3.9940 1.4455 13 6 3.2243 -5.2768 1.4465 14 6 2.4549 -6.3859 0.7261 15 6 2.1771 -5.9594 -0.7167 16 1 1.6285 -6.7492 -1.2299 17 8 3.4150 -5.7234 -1.3905 18 6 1.3428 -4.6762 -0.7177 19 1 -0.4850 0.8401 -0.0004 20 1 1.4462 -4.1736 1.9595 21 1 2.9390 -3.2041 1.9586 22 1 4.1685 -5.0969 0.9326 23 1 3.4218 -5.5809 2.4745 24 1 3.0486 -7.2999 0.7272 25 1 1.5106 -6.5657 1.2399 26 1 3.9957 -6.4957 -1.4280 27 1 1.1449 -4.3724 -1.7456 28 1 0.3985 -4.8558 -0.2037 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260797723.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:31 Heat of formation + Delta-G solvation = -131.033488 kcal Electronic energy + Delta-G solvation = -11837.222074 eV Core-core repulsion = 9658.865024 eV Total energy + Delta-G solvation = -2178.357050 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.23982 -37.90805 -35.46112 -33.77147 -31.19614 -30.09822 -26.69262 -23.38315 -23.06800 -20.78631 -19.61046 -17.96372 -17.38445 -16.40824 -15.97525 -15.46158 -15.13864 -14.77421 -14.41404 -13.63221 -13.35016 -13.24241 -13.07063 -12.68582 -12.29936 -12.20484 -12.11205 -11.71931 -11.44209 -11.12247 -11.08408 -10.54954 -10.06568 -8.17623 -5.85863 1.36969 1.44251 1.53245 2.32765 3.14637 3.42839 3.58619 3.84581 3.96861 4.22595 4.32272 4.39156 4.50600 4.63844 4.68195 4.84349 5.02157 5.07248 5.12236 5.23632 5.27663 5.30397 5.48039 5.53191 6.22437 7.04439 7.25470 8.09347 9.07712 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.066779 B = 0.010181 C = 0.010054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.195569 B = 2749.543335 C = 2784.237074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.046 4.046 3 Si 1.004 2.996 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.370 4.370 8 H 0.064 0.936 9 O -0.335 6.335 10 C 0.093 3.907 11 H 0.027 0.973 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.144 4.144 15 C 0.116 3.884 16 H 0.083 0.917 17 O -0.583 6.583 18 C -0.109 4.109 19 H 0.260 0.740 20 H 0.053 0.947 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.392 0.608 27 H 0.046 0.954 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 -12.831 1.094 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.238 4.238 3 Si 0.826 3.174 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.449 4.449 8 H 0.082 0.918 9 O -0.251 6.251 10 C 0.035 3.965 11 H 0.045 0.955 12 C -0.171 4.171 13 C -0.142 4.142 14 C -0.181 4.181 15 C 0.058 3.942 16 H 0.101 0.899 17 O -0.391 6.391 18 C -0.146 4.146 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.057 0.943 22 H 0.080 0.920 23 H 0.097 0.903 24 H 0.118 0.882 25 H 0.096 0.904 26 H 0.242 0.758 27 H 0.065 0.935 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.318 -12.161 1.037 13.743 hybrid contribution 0.478 0.514 0.035 0.702 sum 6.795 -11.647 1.073 13.527 Atomic orbital electron populations 1.70197 1.07508 1.27133 1.53884 1.26221 0.96807 1.01949 0.98816 0.84781 0.77610 0.76325 0.78677 1.19543 1.20027 1.18490 1.21305 0.90419 0.83827 1.49331 0.91831 1.85565 1.34401 1.11966 1.93122 1.21935 0.93430 0.86093 0.95054 0.95470 1.21992 0.99967 0.98190 0.96975 1.21382 0.98347 0.93358 1.01080 1.22242 1.01930 0.98692 0.95261 1.21730 0.84948 0.94879 0.92685 0.89896 1.86579 1.30914 1.42357 1.79292 1.21602 0.98742 0.94431 0.99867 0.93088 0.92819 0.94313 0.91984 0.90320 0.88238 0.90432 0.75794 0.93478 0.90478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.45 13.68 21.61 0.30 -62.15 15 2 C -0.05 -2.82 5.49 84.82 0.47 -2.36 15 3 Si 1.00 47.26 29.55 68.60 2.03 49.29 15 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 15 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.37 -23.29 9.77 67.91 0.66 -22.63 15 8 H 0.06 3.81 7.64 -2.91 -0.02 3.79 15 9 O -0.33 -20.78 9.43 -81.91 -0.77 -21.55 15 10 C 0.09 4.45 2.50 30.59 0.08 4.53 15 11 H 0.03 1.38 7.34 -2.39 -0.02 1.36 15 12 C -0.13 -5.38 5.54 30.59 0.17 -5.21 15 13 C -0.10 -2.96 5.78 30.60 0.18 -2.78 15 14 C -0.14 -3.25 5.64 30.59 0.17 -3.08 15 15 C 0.12 3.16 3.77 30.61 0.12 3.28 15 16 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 17 O -0.58 -16.29 11.97 -148.98 -1.78 -18.07 15 18 C -0.11 -4.27 5.32 30.61 0.16 -4.11 15 19 H 0.26 15.98 8.31 -92.71 -0.77 15.21 15 20 H 0.05 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 15 22 H 0.06 1.80 7.68 -2.39 -0.02 1.78 15 23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 15 24 H 0.10 1.52 8.14 -2.39 -0.02 1.50 15 25 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 26 H 0.39 6.35 9.08 -74.06 -0.67 5.67 15 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 15 28 H 0.08 2.95 8.14 -2.39 -0.02 2.93 15 Total: -1.00 -77.67 234.96 2.23 -75.44 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.46 Total: 9.40 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 2.00 Total: -32.36 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.30 Total: -62.15 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -2.56 Total: -39.62 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.67 2.23 -75.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260797723.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.594 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds