Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47048 * 2 1 4 4 C 1.42904 * 113.99869 * 175.15989 * 3 2 1 5 5 C 1.50706 * 110.45375 * 57.16634 * 4 3 2 6 6 H 1.07995 * 120.00337 * 240.56827 * 5 4 3 7 7 C 1.37873 * 119.99681 * 60.57653 * 5 4 3 8 8 N 1.31514 * 120.00377 * 354.40038 * 7 5 4 9 9 Si 1.86798 * 120.00087 * 174.40496 * 7 5 4 10 10 H 1.48499 * 109.47445 * 89.99862 * 9 7 5 11 11 H 1.48507 * 109.47418 * 209.99939 * 9 7 5 12 12 H 1.48507 * 109.47197 * 329.99633 * 9 7 5 13 13 C 1.54501 * 110.51206 * 294.42050 * 4 3 2 14 14 C 1.54482 * 104.06235 * 241.35301 * 13 4 3 15 15 O 1.44424 * 104.80268 * 23.97552 * 14 13 4 16 16 C 1.44420 * 105.27600 * 319.49374 * 15 14 13 17 17 H 1.08999 * 109.46767 * 60.00012 * 1 2 3 18 18 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47112 * 300.00123 * 1 2 3 20 20 H 1.08999 * 109.46767 * 119.99988 * 2 1 3 21 21 H 1.09000 * 109.47112 * 239.99877 * 2 1 3 22 22 H 0.97002 * 120.00600 * 180.02562 * 8 7 5 23 23 H 1.09001 * 110.51715 * 359.97438 * 13 4 3 24 24 H 1.09002 * 110.51876 * 122.71069 * 13 4 3 25 25 H 1.08996 * 110.37146 * 265.14570 * 14 13 4 26 26 H 1.09004 * 110.46881 * 142.85503 * 14 13 4 27 27 H 1.09000 * 110.37010 * 281.67629 * 16 15 14 28 28 H 1.08997 * 110.37735 * 159.34192 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4266 1.4617 0.1102 5 6 4.1037 0.7076 -1.0052 6 1 4.7748 -0.1071 -0.7767 7 6 3.8666 1.0580 -2.3174 8 7 2.9677 1.9751 -2.6011 9 14 4.8221 0.2300 -3.6925 10 1 4.0910 -0.9811 -4.1439 11 1 4.9687 1.1726 -4.8307 12 1 6.1665 -0.1596 -3.1963 13 6 3.9062 0.9459 1.4853 14 6 4.5654 2.1802 2.1400 15 8 3.9523 3.3145 1.4895 16 6 3.8527 2.9464 0.0966 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8933 -0.5138 0.8900 21 1 1.8934 -0.5139 -0.8900 22 1 2.8006 2.2214 -3.5243 23 1 3.0601 0.6041 2.0814 24 1 4.6350 0.1452 1.3601 25 1 5.6406 2.1757 1.9611 26 1 4.3596 2.1995 3.2102 27 1 4.8186 3.0595 -0.3958 28 1 3.0978 3.5532 -0.4033 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260851481.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -97.503251 kcal Electronic energy + Delta-G solvation = -12254.230038 eV Core-core repulsion = 10077.326968 eV Total energy + Delta-G solvation = -2176.903070 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.55989 -35.76961 -32.63728 -30.65355 -29.50992 -27.51726 -24.74793 -22.10932 -21.35607 -19.45347 -17.00830 -15.64272 -14.74094 -14.58757 -14.27059 -14.02346 -13.45920 -12.96576 -12.21701 -11.73213 -11.64517 -11.25013 -11.05175 -10.85471 -10.53130 -10.51609 -10.41642 -10.03001 -9.61937 -8.96875 -8.65552 -8.59266 -7.84656 -6.08553 -4.24872 3.22826 3.30931 3.33632 4.32007 5.02670 5.08667 5.30674 5.79992 5.91973 5.96729 6.06420 6.16967 6.33788 6.50072 6.55633 6.62426 6.77949 6.88455 6.95790 7.12108 7.19695 7.33410 7.74234 7.78540 8.15880 8.74879 9.03190 9.47709 10.94786 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.032044 B = 0.019206 C = 0.014427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.580070 B = 1457.545005 C = 1940.364476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 O -0.368 6.368 4 C 0.217 3.783 5 C -0.557 4.557 6 H 0.059 0.941 7 C 0.080 3.920 8 N -0.854 5.854 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.273 1.273 13 C -0.180 4.180 14 C 0.052 3.948 15 O -0.398 6.398 16 C 0.077 3.923 17 H 0.057 0.943 18 H 0.052 0.948 19 H 0.048 0.952 20 H 0.020 0.980 21 H 0.049 0.951 22 H 0.262 0.738 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.141 -2.503 4.033 4.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.001 3.999 3 O -0.288 6.288 4 C 0.179 3.821 5 C -0.594 4.594 6 H 0.078 0.922 7 C -0.126 4.126 8 N -0.489 5.489 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 C -0.218 4.218 14 C -0.025 4.025 15 O -0.318 6.318 16 C 0.001 3.999 17 H 0.076 0.924 18 H 0.071 0.929 19 H 0.067 0.933 20 H 0.038 0.962 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.146 -2.020 3.965 4.452 hybrid contribution 0.754 -0.969 -0.950 1.552 sum 0.608 -2.988 3.014 4.288 Atomic orbital electron populations 1.21722 0.96484 1.00209 1.01912 1.21868 0.92336 0.86853 0.98887 1.87835 1.23050 1.23778 1.94113 1.20232 0.79682 0.92580 0.89625 1.21384 1.28728 1.18574 0.90751 0.92243 1.25035 0.94191 0.94717 0.98691 1.70079 1.29956 1.29800 1.19041 0.86682 0.80643 0.79417 0.81815 1.20554 1.20960 1.19745 1.23587 1.00301 0.98079 0.99800 1.23163 0.96269 0.86623 0.96495 1.88993 1.81952 1.38209 1.22642 1.23367 1.00374 0.96410 0.79778 0.92381 0.92913 0.93294 0.96194 0.93289 0.92800 0.92136 0.91266 0.93454 0.91026 0.92173 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 10.28 37.16 0.38 -2.35 15 2 C 0.08 1.75 6.01 37.16 0.22 1.98 15 3 O -0.37 -9.61 9.35 -35.23 -0.33 -9.94 15 4 C 0.22 5.50 0.63 -90.21 -0.06 5.44 15 5 C -0.56 -14.81 6.68 -34.44 -0.23 -15.04 15 6 H 0.06 1.56 7.40 -52.49 -0.39 1.17 15 7 C 0.08 2.15 5.26 -17.82 -0.09 2.06 15 8 N -0.85 -23.84 12.14 55.43 0.67 -23.17 15 9 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 15 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 13 C -0.18 -3.88 5.89 -25.17 -0.15 -4.03 15 14 C 0.05 1.03 7.63 37.94 0.29 1.32 15 15 O -0.40 -9.35 11.65 -35.23 -0.41 -9.76 15 16 C 0.08 1.93 6.11 37.93 0.23 2.16 15 17 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 18 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.02 0.42 6.68 -51.93 -0.35 0.07 15 21 H 0.05 1.20 7.31 -51.93 -0.38 0.82 15 22 H 0.26 6.98 8.31 -40.82 -0.34 6.65 15 23 H 0.06 1.26 6.93 -51.93 -0.36 0.90 15 24 H 0.07 1.43 7.47 -51.93 -0.39 1.04 15 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.06 1.51 7.86 -51.93 -0.41 1.11 15 28 H 0.09 2.50 8.01 -51.93 -0.42 2.08 15 LS Contribution 233.18 15.07 3.51 3.51 Total: -1.00 -28.77 233.18 -4.91 -33.69 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -3.94 Total: -1.41 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 0.60 Total: -8.46 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.67 Total: -23.17 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.74 Total: -19.70 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.77 -4.91 -33.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260851481.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.816 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds