Wall clock time and date at job start Mon Mar 30 2020 02:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.47048 * 2 1 4 4 C 1.42904 * 113.99869 * 175.15989 * 3 2 1 5 5 C 1.50706 * 110.45375 * 57.16634 * 4 3 2 6 6 H 1.07995 * 120.00337 * 240.56827 * 5 4 3 7 7 C 1.37873 * 119.99681 * 60.57653 * 5 4 3 8 8 N 1.31514 * 120.00377 * 354.40038 * 7 5 4 9 9 Si 1.86798 * 120.00087 * 174.40496 * 7 5 4 10 10 H 1.48499 * 109.47445 * 89.99862 * 9 7 5 11 11 H 1.48507 * 109.47418 * 209.99939 * 9 7 5 12 12 H 1.48507 * 109.47197 * 329.99633 * 9 7 5 13 13 C 1.54501 * 110.51206 * 294.42050 * 4 3 2 14 14 C 1.54482 * 104.06235 * 241.35301 * 13 4 3 15 15 O 1.44424 * 104.80268 * 23.97552 * 14 13 4 16 16 C 1.44420 * 105.27600 * 319.49374 * 15 14 13 17 17 H 1.08999 * 109.46767 * 60.00012 * 1 2 3 18 18 H 1.08997 * 109.47285 * 179.97438 * 1 2 3 19 19 H 1.09000 * 109.47112 * 300.00123 * 1 2 3 20 20 H 1.08999 * 109.46767 * 119.99988 * 2 1 3 21 21 H 1.09000 * 109.47112 * 239.99877 * 2 1 3 22 22 H 0.97002 * 120.00600 * 180.02562 * 8 7 5 23 23 H 1.09001 * 110.51715 * 359.97438 * 13 4 3 24 24 H 1.09002 * 110.51876 * 122.71069 * 13 4 3 25 25 H 1.08996 * 110.37146 * 265.14570 * 14 13 4 26 26 H 1.09004 * 110.46881 * 142.85503 * 14 13 4 27 27 H 1.09000 * 110.37010 * 281.67629 * 16 15 14 28 28 H 1.08997 * 110.37735 * 159.34192 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4266 1.4617 0.1102 5 6 4.1037 0.7076 -1.0052 6 1 4.7748 -0.1071 -0.7767 7 6 3.8666 1.0580 -2.3174 8 7 2.9677 1.9751 -2.6011 9 14 4.8221 0.2300 -3.6925 10 1 4.0910 -0.9811 -4.1439 11 1 4.9687 1.1726 -4.8307 12 1 6.1665 -0.1596 -3.1963 13 6 3.9062 0.9459 1.4853 14 6 4.5654 2.1802 2.1400 15 8 3.9523 3.3145 1.4895 16 6 3.8527 2.9464 0.0966 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3633 0.5139 0.8900 20 1 1.8933 -0.5138 0.8900 21 1 1.8934 -0.5139 -0.8900 22 1 2.8006 2.2214 -3.5243 23 1 3.0601 0.6041 2.0814 24 1 4.6350 0.1452 1.3601 25 1 5.6406 2.1757 1.9611 26 1 4.3596 2.1995 3.2102 27 1 4.8186 3.0595 -0.3958 28 1 3.0978 3.5532 -0.4033 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260851481.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:22 Heat of formation + Delta-G solvation = -116.911205 kcal Electronic energy + Delta-G solvation = -12255.071630 eV Core-core repulsion = 10077.326968 eV Total energy + Delta-G solvation = -2177.744662 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.39797 -37.62499 -34.63449 -32.43508 -31.22869 -29.37823 -26.76817 -23.81406 -23.11082 -21.33508 -18.97343 -17.46767 -16.70910 -16.35824 -16.08123 -15.84731 -15.24929 -14.76586 -14.04541 -13.39309 -13.30971 -13.14101 -12.88438 -12.69882 -12.31978 -12.24748 -12.16589 -11.78529 -11.43506 -10.86425 -10.66636 -10.46449 -9.76427 -8.11372 -6.33985 1.39301 1.42203 1.51193 2.38656 3.08256 3.30825 3.44223 4.12682 4.26386 4.34013 4.47149 4.60958 4.70281 4.75879 4.87307 4.91745 5.07180 5.10767 5.27406 5.30856 5.37727 5.46576 5.68141 5.90339 6.19620 6.73342 7.12011 7.43416 8.91502 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.032044 B = 0.019206 C = 0.014427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.580070 B = 1457.545005 C = 1940.364476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.074 3.926 3 O -0.394 6.394 4 C 0.201 3.799 5 C -0.566 4.566 6 H 0.058 0.942 7 C 0.036 3.964 8 N -0.885 5.885 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.266 1.266 13 C -0.174 4.174 14 C 0.049 3.951 15 O -0.410 6.410 16 C 0.085 3.915 17 H 0.042 0.958 18 H 0.086 0.914 19 H 0.059 0.941 20 H 0.035 0.965 21 H 0.022 0.978 22 H 0.261 0.739 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.052 0.948 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 -3.498 4.832 5.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 O -0.314 6.314 4 C 0.163 3.837 5 C -0.604 4.604 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.520 5.520 9 Si 0.773 3.227 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.190 1.190 13 C -0.212 4.212 14 C -0.027 4.027 15 O -0.329 6.329 16 C 0.009 3.991 17 H 0.061 0.939 18 H 0.105 0.895 19 H 0.078 0.922 20 H 0.053 0.947 21 H 0.041 0.959 22 H 0.070 0.930 23 H 0.087 0.913 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.070 0.930 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.249 -3.025 4.779 5.662 hybrid contribution 0.627 -0.677 -1.143 1.469 sum 0.876 -3.702 3.636 5.263 Atomic orbital electron populations 1.21690 0.93665 1.02418 1.01684 1.22030 0.94663 0.85339 0.98271 1.87795 1.23445 1.25817 1.94342 1.20385 0.79586 0.92432 0.91309 1.21636 1.28629 1.18510 0.91588 0.92355 1.25728 0.94891 0.95251 1.00874 1.70203 1.31338 1.31175 1.19323 0.85727 0.79535 0.78377 0.79033 1.20294 1.20839 1.19021 1.23505 1.00827 0.98964 0.97883 1.23430 0.96827 0.84485 0.97979 1.88967 1.82519 1.39764 1.21693 1.23099 0.99011 0.96356 0.80660 0.93869 0.89492 0.92204 0.94660 0.95942 0.92953 0.91339 0.90489 0.91887 0.87458 0.92995 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 10.28 71.98 0.74 -4.18 15 2 C 0.07 3.27 6.01 71.98 0.43 3.70 15 3 O -0.39 -20.55 9.35 -148.98 -1.39 -21.94 15 4 C 0.20 10.11 0.63 -10.53 -0.01 10.10 15 5 C -0.57 -29.97 6.68 25.60 0.17 -29.80 15 6 H 0.06 3.02 7.40 -2.91 -0.02 3.00 15 7 C 0.04 1.95 5.26 84.65 0.45 2.39 15 8 N -0.88 -50.13 12.14 21.45 0.26 -49.87 15 9 Si 0.95 42.12 29.54 68.60 2.03 44.15 15 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 13 C -0.17 -7.16 5.89 31.61 0.19 -6.98 15 14 C 0.05 1.83 7.63 72.49 0.55 2.38 15 15 O -0.41 -18.78 11.65 -148.98 -1.74 -20.52 15 16 C 0.09 4.32 6.11 72.48 0.44 4.76 15 17 H 0.04 1.65 8.14 -2.39 -0.02 1.63 15 18 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 19 H 0.06 1.99 8.14 -2.39 -0.02 1.97 15 20 H 0.04 1.43 6.68 -2.39 -0.02 1.41 15 21 H 0.02 1.09 7.31 -2.39 -0.02 1.08 15 22 H 0.26 14.15 8.31 -92.71 -0.77 13.38 15 23 H 0.07 2.68 6.93 -2.39 -0.02 2.66 15 24 H 0.08 3.01 7.47 -2.39 -0.02 3.00 15 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 26 H 0.11 3.25 8.14 -2.38 -0.02 3.23 15 27 H 0.05 2.65 7.86 -2.39 -0.02 2.63 15 28 H 0.07 3.67 8.01 -2.39 -0.02 3.65 15 Total: -1.00 -60.65 233.18 3.25 -57.40 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.13 Total: 8.39 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 2.96 Total: -17.61 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: 0.26 Total: -49.87 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -3.13 Total: -42.46 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -60.65 3.25 -57.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260851481.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.512 kcal (2) G-P(sol) polarization free energy of solvation -60.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds