Wall clock time and date at job start Mon Mar 30 2020 02:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.46876 * 2 1 4 4 C 1.42900 * 113.99388 * 185.20672 * 3 2 1 5 5 C 1.50696 * 110.46121 * 302.74460 * 4 3 2 6 6 H 1.07994 * 120.00159 * 121.26304 * 5 4 3 7 7 C 1.37883 * 120.00007 * 301.26242 * 5 4 3 8 8 N 1.31519 * 119.99689 * 4.77700 * 7 5 4 9 9 Si 1.86794 * 119.99905 * 184.77603 * 7 5 4 10 10 H 1.48500 * 109.47280 * 60.00361 * 9 7 5 11 11 H 1.48508 * 109.46835 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47337 * 299.99806 * 9 7 5 13 13 C 1.54511 * 110.51291 * 65.50090 * 4 3 2 14 14 C 1.54475 * 104.06380 * 118.64133 * 13 4 3 15 15 O 1.44425 * 104.80618 * 336.01851 * 14 13 4 16 16 C 1.44426 * 105.26981 * 40.51430 * 15 14 13 17 17 H 1.09001 * 109.47755 * 59.99979 * 1 2 3 18 18 H 1.09000 * 109.47429 * 180.02562 * 1 2 3 19 19 H 1.09005 * 109.47069 * 299.99678 * 1 2 3 20 20 H 1.08997 * 109.46793 * 240.00217 * 2 1 3 21 21 H 1.08996 * 109.46952 * 120.00329 * 2 1 3 22 22 H 0.96995 * 119.99494 * 179.97438 * 8 7 5 23 23 H 1.08997 * 110.50934 * 237.28652 * 13 4 3 24 24 H 1.09000 * 110.51004 * 359.97438 * 13 4 3 25 25 H 1.09001 * 110.37134 * 217.19109 * 14 13 4 26 26 H 1.09006 * 110.47009 * 94.90237 * 14 13 4 27 27 H 1.09005 * 110.37358 * 200.65547 * 16 15 14 28 28 H 1.09000 * 110.46852 * 78.37025 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4257 1.4618 -0.1185 5 6 4.1097 0.7073 0.9923 6 1 4.8021 -0.0878 0.7584 7 6 3.8513 1.0319 2.3072 8 7 2.9392 1.9348 2.5946 9 14 4.7968 0.1894 3.6803 10 1 6.2479 0.4622 3.5219 11 1 4.3349 0.7110 4.9918 12 1 4.5588 -1.2751 3.6190 13 6 3.8973 0.9472 -1.4969 14 6 4.5524 2.1819 -2.1546 15 8 3.9429 3.3158 -1.4998 16 6 3.8518 2.9467 -0.1065 17 1 -0.3635 0.5138 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8901 20 1 1.8932 -0.5138 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 2.7573 2.1629 3.5196 23 1 4.6269 0.1464 -1.3764 24 1 3.0477 0.6050 -2.0879 25 1 4.3386 2.2009 -3.2233 26 1 5.6290 2.1786 -1.9838 27 1 3.0998 3.5531 0.3983 28 1 4.8197 3.0598 0.3819 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260851482.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:23 Heat of formation + Delta-G solvation = -116.637264 kcal Electronic energy + Delta-G solvation = -12257.996907 eV Core-core repulsion = 10080.264124 eV Total energy + Delta-G solvation = -2177.732783 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.39523 -37.62449 -34.61746 -32.43693 -31.22734 -29.38192 -26.76233 -23.81104 -23.10875 -21.32900 -18.97693 -17.46383 -16.70199 -16.35735 -16.08271 -15.84660 -15.24713 -14.76106 -14.04520 -13.39336 -13.31060 -13.12492 -12.87934 -12.67422 -12.34010 -12.24547 -12.16664 -11.78743 -11.43283 -10.87316 -10.65613 -10.46134 -9.76158 -8.10511 -6.33484 1.41026 1.42356 1.49579 2.38979 3.09231 3.30647 3.43935 4.12768 4.26704 4.34129 4.47267 4.61210 4.70141 4.75957 4.87517 4.91753 5.07005 5.10764 5.27362 5.30862 5.38123 5.47006 5.68045 5.90431 6.19747 6.73294 7.12376 7.44026 8.91982 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.019181 C = 0.014434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.110439 B = 1459.458453 C = 1939.338985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.074 3.926 3 O -0.393 6.393 4 C 0.202 3.798 5 C -0.568 4.568 6 H 0.058 0.942 7 C 0.037 3.963 8 N -0.884 5.884 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.272 1.272 13 C -0.174 4.174 14 C 0.049 3.951 15 O -0.409 6.409 16 C 0.084 3.916 17 H 0.059 0.941 18 H 0.086 0.914 19 H 0.042 0.958 20 H 0.035 0.965 21 H 0.022 0.978 22 H 0.261 0.739 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -3.455 -4.834 5.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.002 4.002 3 O -0.312 6.312 4 C 0.163 3.837 5 C -0.605 4.605 6 H 0.076 0.924 7 C -0.167 4.167 8 N -0.519 5.519 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.197 1.197 13 C -0.212 4.212 14 C -0.027 4.027 15 O -0.329 6.329 16 C 0.008 3.992 17 H 0.078 0.922 18 H 0.105 0.895 19 H 0.061 0.939 20 H 0.053 0.947 21 H 0.040 0.960 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.125 0.875 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.236 -2.985 -4.776 5.637 hybrid contribution 0.640 -0.690 1.132 1.472 sum 0.876 -3.675 -3.643 5.248 Atomic orbital electron populations 1.21689 0.93677 1.02401 1.01681 1.22021 0.94641 0.85349 0.98237 1.87794 1.23404 1.25770 1.94275 1.20373 0.79652 0.92384 0.91260 1.21617 1.27336 1.20026 0.91546 0.92350 1.25727 0.94877 0.95268 1.00840 1.70202 1.30686 1.31884 1.19163 0.85786 0.79426 0.78989 0.78486 1.19384 1.21057 1.19711 1.23506 1.00847 0.98953 0.97886 1.23429 0.96887 0.84493 0.97909 1.88968 1.82676 1.39770 1.21495 1.23120 0.99036 0.96389 0.80700 0.92213 0.89514 0.93861 0.94702 0.95975 0.92975 0.90497 0.91348 0.87491 0.91851 0.91587 0.92954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.92 10.28 71.98 0.74 -4.18 15 2 C 0.07 3.30 6.01 71.98 0.43 3.73 15 3 O -0.39 -20.48 9.26 -148.98 -1.38 -21.86 15 4 C 0.20 10.13 0.63 -10.52 -0.01 10.12 15 5 C -0.57 -30.05 6.69 25.60 0.17 -29.88 15 6 H 0.06 3.02 7.39 -2.91 -0.02 3.00 15 7 C 0.04 1.97 5.25 84.66 0.44 2.42 15 8 N -0.88 -50.09 12.18 21.45 0.26 -49.83 15 9 Si 0.95 42.12 29.54 68.60 2.03 44.15 15 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 11 H -0.29 -12.55 7.11 99.48 0.71 -11.84 15 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 13 C -0.17 -7.17 5.89 31.61 0.19 -6.98 15 14 C 0.05 1.83 7.63 72.48 0.55 2.38 15 15 O -0.41 -18.74 11.65 -148.98 -1.74 -20.47 15 16 C 0.08 4.25 6.19 72.49 0.45 4.70 15 17 H 0.06 1.99 8.14 -2.39 -0.02 1.98 15 18 H 0.09 2.48 8.14 -2.39 -0.02 2.47 15 19 H 0.04 1.65 8.14 -2.38 -0.02 1.63 15 20 H 0.03 1.42 6.66 -2.39 -0.02 1.40 15 21 H 0.02 1.08 7.31 -2.39 -0.02 1.06 15 22 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 23 H 0.08 3.01 7.47 -2.39 -0.02 2.99 15 24 H 0.07 2.68 6.93 -2.39 -0.02 2.66 15 25 H 0.11 3.24 8.14 -2.39 -0.02 3.22 15 26 H 0.06 2.16 8.14 -2.38 -0.02 2.14 15 27 H 0.07 3.64 8.06 -2.38 -0.02 3.62 15 28 H 0.05 2.66 7.86 -2.39 -0.02 2.65 15 Total: -1.00 -60.57 233.23 3.27 -57.30 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.13 Total: 8.41 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 2.97 Total: -17.69 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.26 Total: -49.83 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -3.12 Total: -42.33 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -60.57 3.27 -57.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260851482.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.337 kcal (2) G-P(sol) polarization free energy of solvation -60.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds