Wall clock time and date at job start Mon Mar 30 2020 02:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00391 * 2 1 4 4 H 1.48502 * 109.46974 * 83.69050 * 3 2 1 5 5 H 1.48507 * 109.46953 * 203.69228 * 3 2 1 6 6 H 1.48498 * 109.47179 * 323.69139 * 3 2 1 7 7 C 1.37877 * 119.99331 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00333 * 14.50697 * 7 2 1 9 9 C 1.50711 * 119.99648 * 194.50326 * 7 2 1 10 10 C 1.52996 * 109.54065 * 273.37131 * 9 7 2 11 11 O 1.42898 * 109.47697 * 294.86775 * 10 9 7 12 12 C 1.53171 * 109.54097 * 153.19447 * 9 7 2 13 13 C 1.53281 * 109.06672 * 297.03001 * 12 9 7 14 14 O 1.42900 * 109.46051 * 302.44619 * 13 12 9 15 15 C 1.42904 * 114.09852 * 61.15802 * 14 13 12 16 16 C 1.53091 * 109.41142 * 298.84484 * 15 14 13 17 17 H 0.97006 * 119.99605 * 0.02562 * 1 2 3 18 18 H 1.09002 * 109.47357 * 54.87504 * 10 9 7 19 19 H 1.09007 * 109.46697 * 174.87167 * 10 9 7 20 20 H 0.96695 * 114.00211 * 185.00557 * 11 10 9 21 21 H 1.09005 * 109.52423 * 57.02079 * 12 9 7 22 22 H 1.09003 * 109.52467 * 177.20895 * 12 9 7 23 23 H 1.09003 * 109.45950 * 182.44539 * 13 12 9 24 24 H 1.09003 * 109.46639 * 62.44705 * 13 12 9 25 25 H 1.08994 * 109.48320 * 178.85693 * 15 14 13 26 26 H 1.09005 * 109.48939 * 58.82992 * 15 14 13 27 27 H 1.09002 * 109.52099 * 297.69854 * 16 15 14 28 28 H 1.09002 * 109.57162 * 177.54975 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3635 2.1233 1.3916 5 1 3.6071 1.4052 -0.5626 6 1 1.5198 2.6105 -0.8290 7 6 2.0044 -1.1941 -0.0005 8 1 1.4902 -2.1144 -0.2352 9 6 3.4755 -1.2152 0.3263 10 6 4.2860 -0.9574 -0.9454 11 8 4.0905 -2.0362 -1.8619 12 6 3.8521 -2.5821 0.9057 13 6 3.0929 -2.7952 2.2202 14 8 3.4027 -1.7345 3.1263 15 6 3.0298 -0.4376 2.6559 16 6 3.7860 -0.1292 1.3610 17 1 -0.4850 0.8401 -0.0004 18 1 3.9550 -0.0259 -1.4047 19 1 5.3438 -0.8822 -0.6931 20 1 4.6339 -1.9780 -2.6596 21 1 3.5834 -3.3650 0.1964 22 1 4.9249 -2.6142 1.0959 23 1 3.3890 -3.7474 2.6603 24 1 2.0208 -2.8035 2.0233 25 1 3.2804 0.3085 3.4098 26 1 1.9569 -0.4148 2.4645 27 1 4.8575 -0.1117 1.5602 28 1 3.4712 0.8410 0.9765 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260861666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:50 Heat of formation + Delta-G solvation = -102.982541 kcal Electronic energy + Delta-G solvation = -12549.778703 eV Core-core repulsion = 10372.638033 eV Total energy + Delta-G solvation = -2177.140670 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.67103 -37.69731 -35.57833 -33.66338 -32.04863 -28.34666 -26.82993 -24.72659 -23.35502 -20.73630 -18.25600 -17.91072 -17.77980 -16.71954 -16.55841 -15.93559 -15.14460 -14.92858 -14.59277 -14.16478 -13.78397 -13.27723 -12.79712 -12.55406 -12.39207 -12.06680 -11.63092 -11.49927 -11.00582 -10.87255 -10.72392 -10.26354 -10.03950 -8.28581 -6.23476 1.24722 1.31606 1.44025 2.29157 3.03012 3.06734 3.58831 4.01325 4.19590 4.25402 4.32827 4.50561 4.54794 4.61037 4.69227 4.75813 4.92001 5.07935 5.14633 5.19508 5.42974 5.46625 5.74829 6.33604 6.38387 6.74719 7.17213 7.36158 8.89346 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.032476 B = 0.024747 C = 0.019236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.978633 B = 1131.159875 C = 1455.239149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.231 1.231 6 H -0.317 1.317 7 C -0.486 4.486 8 H 0.025 0.975 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.577 6.577 12 C -0.117 4.117 13 C 0.068 3.932 14 O -0.393 6.393 15 C 0.069 3.931 16 C -0.151 4.151 17 H 0.262 0.738 18 H 0.031 0.969 19 H 0.048 0.952 20 H 0.382 0.618 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.029 0.971 25 H 0.103 0.897 26 H 0.035 0.965 27 H 0.087 0.913 28 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.713 0.203 1.668 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.198 1.198 5 H -0.156 1.156 6 H -0.247 1.247 7 C -0.524 4.524 8 H 0.043 0.957 9 C 0.027 3.973 10 C 0.005 3.995 11 O -0.383 6.383 12 C -0.154 4.154 13 C -0.009 4.009 14 O -0.312 6.312 15 C -0.007 4.007 16 C -0.188 4.188 17 H 0.072 0.928 18 H 0.049 0.951 19 H 0.066 0.934 20 H 0.229 0.771 21 H 0.078 0.922 22 H 0.086 0.914 23 H 0.126 0.874 24 H 0.048 0.952 25 H 0.121 0.879 26 H 0.053 0.947 27 H 0.105 0.895 28 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.219 0.059 2.316 10.478 hybrid contribution -0.185 1.025 -1.007 1.449 sum 10.034 1.083 1.309 10.177 Atomic orbital electron populations 1.70103 1.08328 1.27687 1.52429 1.25833 0.95193 1.02536 0.94671 0.86085 0.79330 0.79110 0.77842 1.19796 1.15633 1.24729 1.20831 0.92670 0.93199 1.45678 0.95699 1.18677 0.94181 0.93502 0.90900 1.22641 0.97035 0.88514 0.91276 1.86544 1.69104 1.48228 1.34429 1.21896 0.99196 0.97811 0.96530 1.22575 0.98332 0.89970 0.89979 1.87720 1.83639 1.15502 1.44332 1.22457 0.98128 0.84879 0.95266 1.22520 1.01181 0.97957 0.97132 0.92848 0.95104 0.93410 0.77118 0.92231 0.91354 0.87407 0.95212 0.87917 0.94680 0.89493 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.83 13.96 21.45 0.30 -58.53 15 2 C 0.01 0.81 4.45 84.65 0.38 1.19 15 3 Si 0.94 43.86 22.83 68.60 1.57 45.43 15 4 H -0.27 -11.80 7.03 99.48 0.70 -11.10 15 5 H -0.23 -9.46 4.73 99.48 0.47 -8.99 15 6 H -0.32 -15.23 7.11 99.48 0.71 -14.52 15 7 C -0.49 -27.11 6.56 25.60 0.17 -26.94 15 8 H 0.02 1.60 8.06 -2.91 -0.02 1.58 15 9 C 0.03 1.26 0.34 -52.81 -0.02 1.24 15 10 C 0.08 3.29 5.58 71.98 0.40 3.69 15 11 O -0.58 -22.41 12.61 -148.98 -1.88 -24.29 15 12 C -0.12 -4.69 4.67 30.75 0.14 -4.54 15 13 C 0.07 2.70 6.62 72.08 0.48 3.18 15 14 O -0.39 -15.97 10.77 -148.98 -1.60 -17.57 15 15 C 0.07 2.88 6.24 72.01 0.45 3.32 15 16 C -0.15 -6.17 4.09 30.68 0.13 -6.04 15 17 H 0.26 15.42 8.31 -92.70 -0.77 14.65 15 18 H 0.03 1.28 5.19 -2.39 -0.01 1.27 15 19 H 0.05 1.57 8.14 -2.38 -0.02 1.55 15 20 H 0.38 10.15 9.12 -74.06 -0.68 9.47 15 21 H 0.06 2.51 7.68 -2.38 -0.02 2.49 15 22 H 0.07 2.39 8.14 -2.39 -0.02 2.37 15 23 H 0.11 3.49 8.14 -2.39 -0.02 3.48 15 24 H 0.03 1.37 7.38 -2.39 -0.02 1.36 15 25 H 0.10 3.60 8.14 -2.39 -0.02 3.58 15 26 H 0.03 1.71 6.58 -2.38 -0.02 1.69 15 27 H 0.09 2.99 8.14 -2.39 -0.02 2.97 15 28 H 0.04 1.86 1.37 -2.39 0.00 1.85 15 Total: -1.00 -66.92 211.97 0.75 -66.17 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.24 Total: 13.69 kcal Atomic # 6 Polarization: -27.02 SS G_CDS: 2.12 Total: -24.90 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.30 Total: -58.53 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -3.48 Total: -41.86 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.57 Total: 45.43 kcal Total: -66.92 0.75 -66.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260861666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.811 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds