Wall clock time and date at job start Mon Mar 30 2020 02:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00228 * 2 1 4 4 C 1.50692 * 109.52225 * 300.54092 * 3 2 1 5 5 H 1.08004 * 120.00135 * 124.67983 * 4 3 2 6 6 C 1.37875 * 120.00136 * 304.95397 * 4 3 2 7 7 N 1.31511 * 119.99954 * 5.19903 * 6 4 3 8 8 Si 1.86800 * 120.00032 * 185.19330 * 6 4 3 9 9 H 1.48500 * 109.47419 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47280 * 120.00535 * 8 6 4 11 11 H 1.48507 * 109.47353 * 240.00200 * 8 6 4 12 12 C 1.53181 * 109.57253 * 60.69803 * 3 2 1 13 13 C 1.53181 * 109.03717 * 62.95376 * 12 3 2 14 14 C 1.53099 * 109.15859 * 56.98142 * 13 12 3 15 15 O 1.42899 * 109.41616 * 302.39084 * 14 13 12 16 16 C 1.42904 * 114.09876 * 61.15703 * 15 14 13 17 17 H 1.09004 * 109.46790 * 294.00957 * 1 2 3 18 18 H 1.08997 * 109.47086 * 54.01218 * 1 2 3 19 19 H 1.09001 * 109.46716 * 174.01113 * 1 2 3 20 20 H 0.97000 * 120.00312 * 179.97438 * 7 6 4 21 21 H 1.08994 * 109.54421 * 182.82473 * 12 3 2 22 22 H 1.08997 * 109.54311 * 303.09360 * 12 3 2 23 23 H 1.08998 * 109.52454 * 297.07746 * 13 12 3 24 24 H 1.08997 * 109.57627 * 176.91512 * 13 12 3 25 25 H 1.09000 * 109.47603 * 182.40618 * 14 13 12 26 26 H 1.09003 * 109.48760 * 62.37824 * 14 13 12 27 27 H 1.09006 * 109.47987 * 178.85736 * 16 15 14 28 28 H 1.09000 * 109.49036 * 58.83331 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5558 2.0590 -1.2232 5 1 1.0744 3.0200 -1.1176 6 6 1.7495 1.5192 -2.4771 7 7 2.2368 0.3041 -2.6017 8 14 1.3196 2.5137 -3.9987 9 1 0.7920 3.8404 -3.5904 10 1 2.5366 2.6987 -4.8293 11 1 0.2878 1.7924 -4.7864 12 6 1.5738 2.0615 1.2586 13 6 2.1078 1.3278 2.4927 14 6 3.6303 1.2075 2.3859 15 8 3.9691 0.5219 1.1788 16 6 3.5365 1.1859 -0.0104 17 1 -0.3633 0.4182 0.9388 18 1 -0.3633 0.6039 -0.8315 19 1 -0.3633 -1.0221 -0.1072 20 1 2.3727 -0.0759 -3.4837 21 1 1.9764 3.0741 1.2338 22 1 0.4853 2.1014 1.3009 23 1 1.6664 0.3326 2.5442 24 1 1.8489 1.8880 3.3911 25 1 4.0115 0.6486 3.2406 26 1 4.0740 2.2031 2.3754 27 1 3.8502 0.6114 -0.8821 28 1 3.9788 2.1812 -0.0526 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868625.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:03 Heat of formation + Delta-G solvation = -115.337018 kcal Electronic energy + Delta-G solvation = -12471.647538 eV Core-core repulsion = 10293.971138 eV Total energy + Delta-G solvation = -2177.676400 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.41227 -37.52858 -34.51514 -33.58088 -31.22605 -27.39119 -27.01112 -25.40752 -23.39249 -20.58930 -18.72939 -17.25016 -16.94009 -16.39513 -15.92064 -15.70584 -15.55484 -14.61441 -13.97720 -13.83377 -13.48273 -13.16116 -12.84397 -12.66706 -12.31783 -12.15978 -11.86825 -11.69920 -11.31867 -10.84363 -10.65094 -9.98607 -9.68853 -8.05480 -6.31699 1.38522 1.42281 1.51990 2.39812 3.06589 3.31979 3.67192 4.13490 4.20681 4.30592 4.59616 4.65552 4.73351 4.79181 4.92095 4.99353 5.06476 5.13394 5.18951 5.28829 5.46689 5.63165 5.82017 6.11476 6.51687 6.77403 7.17784 7.47487 8.93697 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052959 B = 0.015785 C = 0.014828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.584451 B = 1773.407843 C = 1887.875128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.386 6.386 3 C 0.200 3.800 4 C -0.572 4.572 5 H 0.053 0.947 6 C 0.038 3.962 7 N -0.881 5.881 8 Si 0.945 3.055 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.283 1.283 12 C -0.139 4.139 13 C -0.144 4.144 14 C 0.056 3.944 15 O -0.411 6.411 16 C 0.091 3.909 17 H 0.030 0.970 18 H 0.024 0.976 19 H 0.064 0.936 20 H 0.260 0.740 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 3.081 6.494 7.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.305 6.305 3 C 0.162 3.838 4 C -0.610 4.610 5 H 0.072 0.928 6 C -0.166 4.166 7 N -0.517 5.517 8 Si 0.771 3.229 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.209 1.209 12 C -0.177 4.177 13 C -0.181 4.181 14 C -0.021 4.021 15 O -0.331 6.331 16 C 0.015 3.985 17 H 0.048 0.952 18 H 0.042 0.958 19 H 0.082 0.918 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.372 2.600 6.372 6.892 hybrid contribution -0.645 0.826 -1.163 1.565 sum -1.017 3.427 5.209 6.317 Atomic orbital electron populations 1.22241 0.83717 0.99917 0.98335 1.87856 1.18026 1.30033 1.94554 1.19686 0.90906 0.81442 0.91778 1.21727 1.41834 1.05369 0.92079 0.92835 1.25714 0.94152 0.95204 1.01522 1.70228 1.43228 1.14635 1.23566 0.85721 0.77977 0.79256 0.79949 1.19181 1.20348 1.20851 1.22126 1.00505 0.99163 0.95928 1.22075 0.96919 1.00915 0.98220 1.22712 0.94634 0.97275 0.87440 1.87832 1.79257 1.50957 1.15030 1.22468 0.94342 0.95482 0.86203 0.95208 0.95784 0.91792 0.93054 0.92034 0.92595 0.92635 0.89083 0.87486 0.92895 0.90369 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.50 10.26 113.37 1.16 3.67 15 2 O -0.39 -20.41 8.75 -141.88 -1.24 -21.65 15 3 C 0.20 10.00 0.32 -11.45 0.00 9.99 15 4 C -0.57 -30.61 6.64 25.60 0.17 -30.44 15 5 H 0.05 2.83 7.75 -2.91 -0.02 2.81 15 6 C 0.04 2.05 5.19 84.65 0.44 2.49 15 7 N -0.88 -50.41 11.18 21.45 0.24 -50.17 15 8 Si 0.95 42.50 29.54 68.60 2.03 44.52 15 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 15 12 C -0.14 -5.73 4.49 30.72 0.14 -5.59 15 13 C -0.14 -4.98 5.98 30.69 0.18 -4.79 15 14 C 0.06 1.93 6.84 72.02 0.49 2.42 15 15 O -0.41 -18.79 10.70 -141.88 -1.52 -20.31 15 16 C 0.09 4.55 5.60 72.01 0.40 4.95 15 17 H 0.03 1.20 6.69 -2.39 -0.02 1.18 15 18 H 0.02 1.17 6.91 -2.39 -0.02 1.15 15 19 H 0.06 2.66 8.14 -2.39 -0.02 2.64 15 20 H 0.26 14.19 8.31 -92.71 -0.77 13.42 15 21 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.06 2.26 6.55 -2.39 -0.02 2.24 15 23 H 0.05 2.08 7.83 -2.39 -0.02 2.06 15 24 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 25 H 0.11 3.03 8.14 -2.39 -0.02 3.02 15 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 27 H 0.08 4.41 6.76 -2.38 -0.02 4.39 15 28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -61.46 226.47 3.62 -57.84 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.13 Total: 7.06 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 2.99 Total: -17.30 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.24 Total: -50.17 kcal Atomic # 8 Polarization: -39.20 SS G_CDS: -2.76 Total: -41.96 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -61.46 3.62 -57.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868625.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.497 kcal (2) G-P(sol) polarization free energy of solvation -61.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds