Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99981 * 2 1 4 4 C 1.50700 * 109.57219 * 59.30524 * 3 2 1 5 5 H 1.07999 * 119.99891 * 235.22213 * 4 3 2 6 6 C 1.37880 * 120.00243 * 55.21618 * 4 3 2 7 7 N 1.31515 * 119.99981 * 354.49453 * 6 4 3 8 8 Si 1.86795 * 119.99973 * 174.48710 * 6 4 3 9 9 H 1.48510 * 109.46722 * 90.00537 * 8 6 4 10 10 H 1.48496 * 109.47294 * 210.00143 * 8 6 4 11 11 H 1.48496 * 109.47510 * 330.00896 * 8 6 4 12 12 C 1.53171 * 109.52348 * 299.14364 * 3 2 1 13 13 C 1.53201 * 109.04569 * 297.07271 * 12 3 2 14 14 C 1.53093 * 109.15078 * 303.03264 * 13 12 3 15 15 O 1.42898 * 109.42573 * 57.59965 * 14 13 12 16 16 C 1.42904 * 114.09752 * 298.83321 * 15 14 13 17 17 H 1.09002 * 109.46834 * 305.97847 * 1 2 3 18 18 H 1.08999 * 109.47133 * 65.97205 * 1 2 3 19 19 H 1.09002 * 109.47677 * 185.97748 * 1 2 3 20 20 H 0.96997 * 119.99982 * 179.97438 * 7 6 4 21 21 H 1.08999 * 109.54289 * 56.94728 * 12 3 2 22 22 H 1.09006 * 109.53802 * 177.11700 * 12 3 2 23 23 H 1.08997 * 109.54144 * 183.12214 * 13 12 3 24 24 H 1.08998 * 109.51747 * 62.92319 * 13 12 3 25 25 H 1.09006 * 109.47431 * 297.61080 * 14 13 12 26 26 H 1.08999 * 109.48077 * 177.59494 * 14 13 12 27 27 H 1.09005 * 109.47694 * 181.13913 * 16 15 14 28 28 H 1.08992 * 109.48663 * 301.16568 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5534 2.0615 1.2210 5 1 1.0740 3.0232 1.1127 6 6 1.7473 1.5254 2.4764 7 7 2.2313 0.3093 2.6046 8 14 1.3228 2.5265 3.9952 9 1 -0.0898 2.2722 4.3767 10 1 2.2162 2.1321 5.1138 11 1 1.5040 3.9710 3.7026 12 6 1.5761 2.0591 -1.2609 13 6 2.1127 1.3231 -2.4928 14 6 3.6349 1.2028 -2.3825 15 8 3.9713 0.5196 -1.1734 16 6 3.5364 1.1859 0.0137 17 1 -0.3633 0.6038 0.8317 18 1 -0.3633 0.4184 -0.9386 19 1 -0.3634 -1.0221 0.1070 20 1 2.3681 -0.0677 3.4877 21 1 0.4878 2.0990 -1.3053 22 1 1.9775 3.0723 -1.2363 23 1 1.8557 1.8825 -3.3923 24 1 1.6714 0.3277 -2.5431 25 1 4.0783 2.1986 -2.3729 26 1 4.0180 0.6425 -3.2354 27 1 3.8484 0.6131 0.8870 28 1 3.9788 2.1812 0.0547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260868627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = -95.869816 kcal Electronic energy + Delta-G solvation = -12470.579727 eV Core-core repulsion = 10293.747488 eV Total energy + Delta-G solvation = -2176.832239 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.63004 -35.67572 -32.48212 -31.89825 -29.39229 -25.46834 -25.15370 -23.60812 -21.67905 -18.81573 -16.73712 -15.48865 -15.05628 -14.62025 -14.14737 -13.88578 -13.69106 -12.86628 -12.11046 -12.04700 -11.80637 -11.37436 -10.98842 -10.83792 -10.42414 -10.36002 -10.23140 -9.91732 -9.52284 -9.05428 -8.60183 -8.17217 -7.76812 -6.01791 -4.21470 3.24458 3.32665 3.35411 4.34367 4.88963 5.21437 5.51943 5.66096 5.73526 5.85218 6.12021 6.31563 6.44803 6.52029 6.58285 6.68414 6.76798 6.81962 7.06031 7.09343 7.21652 7.61480 7.81534 8.05717 8.33863 8.76375 9.11891 9.51805 10.98100 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052903 B = 0.015789 C = 0.014829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.139753 B = 1772.930957 C = 1887.724907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 O -0.359 6.359 3 C 0.212 3.788 4 C -0.562 4.562 5 H 0.057 0.943 6 C 0.081 3.919 7 N -0.850 5.850 8 Si 0.885 3.115 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C -0.142 4.142 13 C -0.150 4.150 14 C 0.066 3.934 15 O -0.391 6.391 16 C 0.084 3.916 17 H 0.044 0.956 18 H 0.007 0.993 19 H 0.049 0.951 20 H 0.261 0.739 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.113 0.887 28 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 2.188 -5.432 5.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.278 6.278 3 C 0.174 3.826 4 C -0.599 4.599 5 H 0.075 0.925 6 C -0.126 4.126 7 N -0.485 5.485 8 Si 0.712 3.288 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C -0.180 4.180 13 C -0.188 4.188 14 C -0.012 4.012 15 O -0.310 6.310 16 C 0.008 3.992 17 H 0.063 0.937 18 H 0.025 0.975 19 H 0.068 0.932 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.047 1.693 -5.291 5.556 hybrid contribution -0.742 1.119 0.898 1.615 sum -0.789 2.813 -4.393 5.276 Atomic orbital electron populations 1.22185 0.85030 0.99166 0.98045 1.87907 1.16446 1.29069 1.94328 1.19546 0.90890 0.81640 0.90547 1.21409 1.42218 1.05420 0.90903 0.92461 1.25044 0.94208 0.94456 0.98851 1.70092 1.42033 1.13241 1.23131 0.86722 0.78411 0.80753 0.82893 1.20589 1.20960 1.19802 1.22215 1.00399 0.99047 0.96360 1.22115 0.97202 1.01485 0.98021 1.22350 0.94329 0.96022 0.88492 1.87882 1.79006 1.49976 1.14126 1.22757 0.94180 0.95908 0.86358 0.93744 0.97488 0.93219 0.92856 0.92603 0.92700 0.92998 0.91267 0.94658 0.90634 0.86865 0.94342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.23 10.26 101.05 1.04 2.27 15 2 O -0.36 -9.53 8.75 -42.72 -0.37 -9.90 15 3 C 0.21 5.35 0.32 -91.63 -0.03 5.32 15 4 C -0.56 -15.06 6.64 -34.44 -0.23 -15.28 15 5 H 0.06 1.52 7.75 -52.49 -0.41 1.12 15 6 C 0.08 2.19 5.19 -17.82 -0.09 2.09 15 7 N -0.85 -23.96 11.18 55.43 0.62 -23.34 15 8 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 15 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 12 C -0.14 -3.07 4.49 -26.54 -0.12 -3.19 15 13 C -0.15 -2.84 5.98 -26.58 -0.16 -3.00 15 14 C 0.07 1.23 6.84 37.21 0.25 1.49 15 15 O -0.39 -9.13 10.70 -42.72 -0.46 -9.58 15 16 C 0.08 2.08 5.60 37.21 0.21 2.29 15 17 H 0.04 1.09 6.91 -51.93 -0.36 0.73 15 18 H 0.01 0.14 6.69 -51.93 -0.35 -0.20 15 19 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.06 1.18 6.55 -51.93 -0.34 0.84 15 22 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 23 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.07 1.39 7.83 -51.93 -0.41 0.98 15 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 27 H 0.11 3.10 6.76 -51.93 -0.35 2.75 15 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 226.47 15.07 3.41 3.41 Total: -1.00 -29.05 226.47 -4.83 -33.88 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: -3.88 Total: -2.09 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 0.87 Total: -8.01 kcal Atomic # 7 Polarization: -23.96 SS G_CDS: 0.62 Total: -23.34 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.83 Total: -19.48 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -29.05 -4.83 -33.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.986 kcal (2) G-P(sol) polarization free energy of solvation -29.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds