Wall clock time and date at job start Mon Mar 30 2020 02:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99981 * 2 1 4 4 C 1.50700 * 109.57219 * 59.30524 * 3 2 1 5 5 H 1.07999 * 119.99891 * 235.22213 * 4 3 2 6 6 C 1.37880 * 120.00243 * 55.21618 * 4 3 2 7 7 N 1.31515 * 119.99981 * 354.49453 * 6 4 3 8 8 Si 1.86795 * 119.99973 * 174.48710 * 6 4 3 9 9 H 1.48510 * 109.46722 * 90.00537 * 8 6 4 10 10 H 1.48496 * 109.47294 * 210.00143 * 8 6 4 11 11 H 1.48496 * 109.47510 * 330.00896 * 8 6 4 12 12 C 1.53171 * 109.52348 * 299.14364 * 3 2 1 13 13 C 1.53201 * 109.04569 * 297.07271 * 12 3 2 14 14 C 1.53093 * 109.15078 * 303.03264 * 13 12 3 15 15 O 1.42898 * 109.42573 * 57.59965 * 14 13 12 16 16 C 1.42904 * 114.09752 * 298.83321 * 15 14 13 17 17 H 1.09002 * 109.46834 * 305.97847 * 1 2 3 18 18 H 1.08999 * 109.47133 * 65.97205 * 1 2 3 19 19 H 1.09002 * 109.47677 * 185.97748 * 1 2 3 20 20 H 0.96997 * 119.99982 * 179.97438 * 7 6 4 21 21 H 1.08999 * 109.54289 * 56.94728 * 12 3 2 22 22 H 1.09006 * 109.53802 * 177.11700 * 12 3 2 23 23 H 1.08997 * 109.54144 * 183.12214 * 13 12 3 24 24 H 1.08998 * 109.51747 * 62.92319 * 13 12 3 25 25 H 1.09006 * 109.47431 * 297.61080 * 14 13 12 26 26 H 1.08999 * 109.48077 * 177.59494 * 14 13 12 27 27 H 1.09005 * 109.47694 * 181.13913 * 16 15 14 28 28 H 1.08992 * 109.48663 * 301.16568 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5534 2.0615 1.2210 5 1 1.0740 3.0232 1.1127 6 6 1.7473 1.5254 2.4764 7 7 2.2313 0.3093 2.6046 8 14 1.3228 2.5265 3.9952 9 1 -0.0898 2.2722 4.3767 10 1 2.2162 2.1321 5.1138 11 1 1.5040 3.9710 3.7026 12 6 1.5761 2.0591 -1.2609 13 6 2.1127 1.3231 -2.4928 14 6 3.6349 1.2028 -2.3825 15 8 3.9713 0.5196 -1.1734 16 6 3.5364 1.1859 0.0137 17 1 -0.3633 0.6038 0.8317 18 1 -0.3633 0.4184 -0.9386 19 1 -0.3634 -1.0221 0.1070 20 1 2.3681 -0.0677 3.4877 21 1 0.4878 2.0990 -1.3053 22 1 1.9775 3.0723 -1.2363 23 1 1.8557 1.8825 -3.3923 24 1 1.6714 0.3277 -2.5431 25 1 4.0783 2.1986 -2.3729 26 1 4.0180 0.6425 -3.2354 27 1 3.8484 0.6131 0.8870 28 1 3.9788 2.1812 0.0547 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:05 Heat of formation + Delta-G solvation = -115.290889 kcal Electronic energy + Delta-G solvation = -12471.421888 eV Core-core repulsion = 10293.747488 eV Total energy + Delta-G solvation = -2177.674400 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.41118 -37.52760 -34.51444 -33.57933 -31.22548 -27.39024 -27.00794 -25.40859 -23.39174 -20.58831 -18.72756 -17.24964 -16.93610 -16.39608 -15.92154 -15.70278 -15.55652 -14.61353 -13.97084 -13.83292 -13.48378 -13.15932 -12.84032 -12.66694 -12.30701 -12.17404 -11.87472 -11.70377 -11.31698 -10.84662 -10.63855 -9.99004 -9.68783 -8.05285 -6.31530 1.39332 1.42391 1.51356 2.39951 3.06687 3.32004 3.67219 4.13493 4.20615 4.30722 4.59580 4.65565 4.73373 4.79182 4.92096 4.99412 5.06436 5.13412 5.19099 5.28870 5.46758 5.63035 5.81903 6.11442 6.51611 6.77357 7.17792 7.47484 8.93693 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052903 B = 0.015789 C = 0.014829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.139753 B = 1772.930957 C = 1887.724907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.386 6.386 3 C 0.201 3.799 4 C -0.573 4.573 5 H 0.054 0.946 6 C 0.038 3.962 7 N -0.880 5.880 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.267 1.267 12 C -0.140 4.140 13 C -0.144 4.144 14 C 0.056 3.944 15 O -0.411 6.411 16 C 0.091 3.909 17 H 0.023 0.977 18 H 0.030 0.970 19 H 0.064 0.936 20 H 0.260 0.740 21 H 0.055 0.945 22 H 0.061 0.939 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.629 3.069 -6.491 7.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 O -0.305 6.305 3 C 0.162 3.838 4 C -0.611 4.611 5 H 0.072 0.928 6 C -0.166 4.166 7 N -0.516 5.516 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.192 1.192 12 C -0.177 4.177 13 C -0.181 4.181 14 C -0.021 4.021 15 O -0.331 6.331 16 C 0.015 3.985 17 H 0.042 0.958 18 H 0.048 0.952 19 H 0.082 0.918 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.125 0.875 27 H 0.096 0.904 28 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.350 2.587 -6.365 6.880 hybrid contribution -0.653 0.838 1.157 1.571 sum -1.004 3.425 -5.208 6.314 Atomic orbital electron populations 1.22236 0.83717 0.99908 0.98323 1.87854 1.18024 1.30044 1.94553 1.19683 0.90901 0.81437 0.91761 1.21696 1.41959 1.05371 0.92082 0.92823 1.25715 0.94128 0.95236 1.01502 1.70224 1.43179 1.14695 1.23533 0.85778 0.78051 0.79543 0.79577 1.20355 1.20777 1.19162 1.22131 1.00509 0.99152 0.95944 1.22076 0.96911 1.00901 0.98228 1.22710 0.94657 0.97305 0.87391 1.87832 1.79250 1.50955 1.15033 1.22469 0.94323 0.95439 0.86267 0.95813 0.95214 0.91790 0.93048 0.92598 0.92048 0.89080 0.92622 0.92906 0.87482 0.90368 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.52 10.26 113.37 1.16 3.68 15 2 O -0.39 -20.42 8.75 -141.82 -1.24 -21.66 15 3 C 0.20 10.01 0.32 -11.45 0.00 10.01 15 4 C -0.57 -30.66 6.64 25.60 0.17 -30.49 15 5 H 0.05 2.83 7.75 -2.91 -0.02 2.81 15 6 C 0.04 2.06 5.19 84.66 0.44 2.50 15 7 N -0.88 -50.40 11.18 21.45 0.24 -50.16 15 8 Si 0.95 42.46 29.54 68.60 2.03 44.49 15 9 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 12 C -0.14 -5.74 4.49 30.72 0.14 -5.60 15 13 C -0.14 -4.97 5.98 30.69 0.18 -4.79 15 14 C 0.06 1.93 6.84 72.01 0.49 2.42 15 15 O -0.41 -18.79 10.70 -141.82 -1.52 -20.31 15 16 C 0.09 4.55 5.60 72.01 0.40 4.95 15 17 H 0.02 1.15 6.91 -2.39 -0.02 1.14 15 18 H 0.03 1.20 6.69 -2.39 -0.02 1.18 15 19 H 0.06 2.66 8.14 -2.39 -0.02 2.64 15 20 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 21 H 0.06 2.26 6.55 -2.39 -0.02 2.24 15 22 H 0.06 2.41 8.14 -2.38 -0.02 2.39 15 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 15 24 H 0.05 2.08 7.83 -2.39 -0.02 2.07 15 25 H 0.05 1.66 8.14 -2.38 -0.02 1.64 15 26 H 0.11 3.04 8.14 -2.39 -0.02 3.02 15 27 H 0.08 4.41 6.76 -2.38 -0.02 4.39 15 28 H 0.04 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -61.40 226.47 3.62 -57.78 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.13 Total: 7.17 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 2.99 Total: -17.31 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: 0.24 Total: -50.16 kcal Atomic # 8 Polarization: -39.21 SS G_CDS: -2.76 Total: -41.97 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -61.40 3.62 -57.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.514 kcal (2) G-P(sol) polarization free energy of solvation -61.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds