Wall clock time and date at job start Mon Mar 30 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00122 * 2 1 4 4 H 1.48499 * 109.47036 * 275.40956 * 3 2 1 5 5 H 1.48501 * 109.46743 * 35.40606 * 3 2 1 6 6 H 1.48497 * 109.47223 * 155.40687 * 3 2 1 7 7 C 1.39936 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99903 * 341.74006 * 7 2 1 9 9 C 1.41425 * 119.99712 * 161.73789 * 7 2 1 10 10 C 1.40800 * 120.08568 * 330.15221 * 9 7 2 11 11 C 1.37805 * 119.86495 * 179.97438 * 10 9 7 12 12 C 1.38021 * 120.28098 * 0.26959 * 11 10 9 13 13 C 1.40037 * 120.89161 * 359.44932 * 12 11 10 14 14 C 1.39159 * 119.42560 * 0.54540 * 13 12 11 15 15 C 1.47526 * 108.83956 * 180.33878 * 13 12 11 16 16 C 1.32117 * 111.08133 * 359.47548 * 15 13 12 17 17 C 1.51019 * 132.90038 * 179.72536 * 12 11 10 18 18 H 0.96998 * 120.00485 * 0.02562 * 1 2 3 19 19 H 1.08007 * 120.06896 * 359.95257 * 10 9 7 20 20 H 1.08001 * 119.85715 * 179.97438 * 11 10 9 21 21 H 1.08001 * 120.15194 * 179.70846 * 14 13 12 22 22 H 1.07999 * 124.45717 * 180.24666 * 15 13 12 23 23 H 1.08004 * 125.81383 * 180.09593 * 16 15 13 24 24 H 1.08999 * 110.24599 * 299.01106 * 17 12 11 25 25 H 1.09004 * 110.24192 * 60.90545 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5923 1.4099 0.5827 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2940 9 6 3.3687 -1.2428 -0.3833 10 6 3.8603 -0.3102 -1.3166 11 6 5.1872 -0.3442 -1.6869 12 6 6.0353 -1.2921 -1.1510 13 6 5.5709 -2.2263 -0.2168 14 6 4.2332 -2.2033 0.1661 15 6 6.6916 -3.0990 0.1816 16 6 7.8014 -2.7672 -0.4537 17 6 7.5024 -1.5894 -1.3509 18 1 -0.4851 0.8400 -0.0004 19 1 3.1986 0.4301 -1.7417 20 1 5.5640 0.3710 -2.4032 21 1 3.8615 -2.9213 0.8821 22 1 6.6121 -3.9108 0.8895 23 1 8.7614 -3.2496 -0.3429 24 1 7.6962 -1.8492 -2.3916 25 1 8.1047 -0.7290 -1.0592 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260906568.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:02 Heat of formation + Delta-G solvation = 17.400247 kcal Electronic energy + Delta-G solvation = -10483.688242 eV Core-core repulsion = 8619.076681 eV Total energy + Delta-G solvation = -1864.611561 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 186.074 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.64335 -37.23464 -34.94361 -32.17185 -30.47972 -28.37046 -25.98094 -23.07013 -21.81439 -20.37319 -18.82286 -17.29084 -16.71788 -15.99420 -15.31608 -15.11599 -14.73850 -14.08521 -13.95557 -13.46267 -13.03301 -12.65383 -12.38691 -12.22501 -12.08314 -11.72861 -11.27167 -11.07759 -10.74118 -9.42024 -8.91473 -8.84878 -6.51364 0.32070 0.76714 1.23147 1.38241 1.45256 1.78187 2.12040 2.64906 3.51001 3.84817 3.97174 4.28549 4.37706 4.60410 4.77631 4.88353 4.94523 4.99003 5.06086 5.30962 5.43333 5.52548 5.71935 5.86957 6.00321 6.18394 6.23331 6.37394 6.72222 6.81324 8.18470 Molecular weight = 186.07amu Principal moments of inertia in cm(-1) A = 0.066956 B = 0.012554 C = 0.011219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.086661 B = 2229.851067 C = 2495.196087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.048 3.952 3 Si 0.967 3.033 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.052 0.948 9 C 0.070 3.930 10 C -0.245 4.245 11 C -0.068 4.068 12 C -0.220 4.220 13 C -0.065 4.065 14 C -0.210 4.210 15 C -0.152 4.152 16 C -0.134 4.134 17 C -0.049 4.049 18 H 0.294 0.706 19 H 0.102 0.898 20 H 0.130 0.870 21 H 0.093 0.907 22 H 0.133 0.867 23 H 0.179 0.821 24 H 0.104 0.896 25 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.137 0.508 -1.936 13.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.166 4.166 3 Si 0.790 3.210 4 H -0.179 1.179 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.523 4.523 8 H 0.071 0.929 9 C 0.068 3.932 10 C -0.265 4.265 11 C -0.086 4.086 12 C -0.221 4.221 13 C -0.065 4.065 14 C -0.230 4.230 15 C -0.170 4.170 16 C -0.152 4.152 17 C -0.085 4.085 18 H 0.104 0.896 19 H 0.120 0.880 20 H 0.148 0.852 21 H 0.112 0.888 22 H 0.151 0.849 23 H 0.196 0.804 24 H 0.122 0.878 25 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 12.841 0.594 -1.924 12.998 hybrid contribution -0.840 0.342 0.275 0.948 sum 12.000 0.936 -1.649 12.149 Atomic orbital electron populations 1.69721 1.09117 1.31421 1.37728 1.26794 0.95342 1.04121 0.90318 0.85471 0.79358 0.76496 0.79646 1.17931 1.20121 1.18218 1.19430 0.94532 0.95676 1.42614 0.92947 1.17723 0.92566 0.92242 0.90653 1.21171 0.96639 1.04639 1.04003 1.20176 0.92129 0.97504 0.98795 1.20576 0.97592 1.00160 1.03783 1.20078 0.93132 0.96523 0.96785 1.20951 0.92870 1.04150 1.05017 1.22054 0.92699 0.99973 1.02263 1.24074 0.98626 0.96710 0.95750 1.19855 0.90498 0.97576 1.00549 0.89584 0.88019 0.85197 0.88840 0.84878 0.80357 0.87800 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.45 13.93 21.82 0.30 -48.15 15 2 C 0.05 2.69 5.40 85.25 0.46 3.15 15 3 Si 0.97 44.38 24.51 68.60 1.68 46.06 15 4 H -0.25 -10.87 6.71 99.48 0.67 -10.20 15 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 6 H -0.26 -12.25 6.87 99.48 0.68 -11.57 15 7 C -0.49 -29.23 9.56 23.47 0.22 -29.01 15 8 H 0.05 3.34 8.06 -2.91 -0.02 3.32 15 9 C 0.07 3.84 5.10 -21.34 -0.11 3.73 15 10 C -0.25 -12.15 7.17 22.79 0.16 -11.99 15 11 C -0.07 -2.88 10.00 22.12 0.22 -2.66 15 12 C -0.22 -8.80 6.39 -19.38 -0.12 -8.92 15 13 C -0.07 -2.82 6.21 -20.17 -0.13 -2.95 15 14 C -0.21 -10.64 9.84 23.02 0.23 -10.41 15 15 C -0.15 -5.03 10.75 23.74 0.26 -4.77 15 16 C -0.13 -3.44 11.07 24.82 0.27 -3.17 15 17 C -0.05 -1.38 6.76 29.31 0.20 -1.18 15 18 H 0.29 14.90 8.30 -92.71 -0.77 14.13 15 19 H 0.10 4.96 4.73 -2.91 -0.01 4.95 15 20 H 0.13 4.49 8.06 -2.91 -0.02 4.47 15 21 H 0.09 4.64 8.06 -2.91 -0.02 4.61 15 22 H 0.13 3.85 8.06 -2.91 -0.02 3.83 15 23 H 0.18 2.94 8.06 -2.91 -0.02 2.92 15 24 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 25 H 0.10 2.49 8.14 -2.39 -0.02 2.47 15 Total: -1.00 -64.66 216.97 4.77 -59.89 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.12 Total: 10.39 kcal Atomic # 6 Polarization: -69.86 SS G_CDS: 1.67 Total: -68.19 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.30 Total: -48.15 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.68 Total: 46.06 kcal Total: -64.66 4.77 -59.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260906568.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.293 kcal (2) G-P(sol) polarization free energy of solvation -64.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds