Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.30569 * 2 1 4 4 C 1.53110 * 109.36175 * 240.21421 * 2 1 3 5 5 S 1.81750 * 108.80512 * 176.78797 * 4 2 1 6 6 C 1.81746 * 102.22060 * 53.28649 * 5 4 2 7 7 C 1.53094 * 108.84199 * 306.73339 * 6 5 4 8 8 C 1.52580 * 109.95611 * 63.02500 * 7 6 5 9 9 H 1.09008 * 109.22750 * 49.60427 * 8 7 6 10 10 C 1.50701 * 109.22919 * 169.00267 * 8 7 6 11 11 H 1.08002 * 119.99761 * 120.59270 * 10 8 7 12 12 C 1.37871 * 119.99694 * 300.87833 * 10 8 7 13 13 N 1.31523 * 119.99908 * 179.72112 * 12 10 8 14 14 Si 1.86800 * 120.00405 * 359.71709 * 12 10 8 15 15 H 1.48500 * 109.47210 * 90.00069 * 14 12 10 16 16 H 1.48504 * 109.47424 * 210.00300 * 14 12 10 17 17 H 1.48502 * 109.46888 * 330.00390 * 14 12 10 18 18 H 1.08993 * 109.47663 * 300.24800 * 1 2 3 19 19 H 1.08997 * 109.47208 * 60.25270 * 1 2 3 20 20 H 1.09007 * 109.46928 * 180.24691 * 1 2 3 21 21 H 1.08998 * 109.57498 * 57.00459 * 4 2 1 22 22 H 1.08995 * 109.71824 * 296.66029 * 4 2 1 23 23 H 1.09005 * 109.57521 * 186.92257 * 6 5 4 24 24 H 1.09004 * 109.57418 * 66.54357 * 6 5 4 25 25 H 1.08997 * 109.38760 * 302.87804 * 7 6 5 26 26 H 1.08998 * 109.31039 * 183.12401 * 7 6 5 27 27 H 0.96995 * 120.00181 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8904 1.0287 0.0000 4 6 2.0376 -0.7176 -1.2537 5 16 3.8525 -0.6256 -1.2870 6 6 4.3011 -1.2828 0.3470 7 6 3.5379 -0.5023 1.4204 8 6 2.0366 -0.7141 1.2496 9 1 1.8324 -1.7812 1.1609 10 6 1.3181 -0.1704 2.4576 11 1 0.5833 0.6126 2.3417 12 6 1.6031 -0.6684 3.7112 13 7 0.9800 -0.1901 4.7661 14 14 2.8740 -2.0226 3.9116 15 1 4.2139 -1.4171 4.1198 16 1 2.5224 -2.8620 5.0852 17 1 2.8963 -2.8654 2.6891 18 1 -0.3634 0.5176 0.8877 19 1 -0.3633 0.5099 -0.8922 20 1 -0.3633 -1.0277 0.0044 21 1 1.6311 -0.2333 -2.1415 22 1 1.7252 -1.7615 -1.2317 23 1 5.3735 -1.1679 0.5050 24 1 4.0329 -2.3379 0.4025 25 1 3.7665 0.5593 1.3271 26 1 3.8430 -0.8529 2.4063 27 1 1.1802 -0.5407 5.6481 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933055.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = -16.363126 kcal Electronic energy + Delta-G solvation = -10094.182279 eV Core-core repulsion = 8363.550579 eV Total energy + Delta-G solvation = -1730.631699 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -37.22426 -32.50501 -31.82980 -27.97523 -26.34894 -23.12029 -21.52047 -19.09102 -16.97661 -16.08628 -14.92268 -14.13782 -13.63016 -13.23774 -12.90097 -12.81619 -12.21191 -12.03349 -11.74038 -11.08433 -10.91396 -10.54905 -10.25459 -10.02217 -9.78934 -9.63038 -9.02930 -8.81845 -8.58287 -7.25005 -6.11596 -4.10823 2.28231 2.98178 3.20410 3.31889 3.34933 4.34995 5.14060 5.39521 5.45118 5.55299 5.61862 5.87828 5.91623 6.07222 6.20103 6.34725 6.39757 6.59955 6.81225 6.88008 7.01350 7.10927 7.44517 7.70599 8.47245 8.92587 9.50124 11.00826 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.045612 B = 0.017804 C = 0.013745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.728676 B = 1572.319816 C = 2036.583869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 H 0.072 0.928 4 C -0.068 4.068 5 S -0.301 6.301 6 C -0.077 4.077 7 C -0.124 4.124 8 C 0.012 3.988 9 H 0.025 0.975 10 C -0.509 4.509 11 H 0.082 0.918 12 C 0.068 3.932 13 N -0.899 5.899 14 Si 0.883 3.117 15 H -0.278 1.278 16 H -0.297 1.297 17 H -0.266 1.266 18 H 0.076 0.924 19 H 0.033 0.967 20 H 0.046 0.954 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.411 -2.120 -8.596 9.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.216 4.216 5 S -0.074 6.074 6 C -0.225 4.225 7 C -0.162 4.162 8 C -0.007 4.007 9 H 0.043 0.957 10 C -0.547 4.547 11 H 0.100 0.900 12 C -0.133 4.133 13 N -0.538 5.538 14 Si 0.714 3.286 15 H -0.205 1.205 16 H -0.225 1.225 17 H -0.191 1.191 18 H 0.095 0.905 19 H 0.052 0.948 20 H 0.065 0.935 21 H 0.111 0.889 22 H 0.095 0.905 23 H 0.109 0.891 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.085 -1.782 -9.238 10.257 hybrid contribution 0.035 -1.219 1.253 1.748 sum 4.120 -3.001 -7.985 9.473 Atomic orbital electron populations 1.21786 0.94864 1.01386 1.01074 1.21183 0.96154 0.99465 0.92588 0.90990 1.23603 0.91688 1.03844 1.02459 1.86323 1.09722 1.86576 1.24763 1.23541 1.02876 1.02086 0.93960 1.22233 0.98096 0.99989 0.95910 1.19145 0.90771 0.96344 0.94444 0.95681 1.21082 1.22692 1.21762 0.89169 0.90007 1.25048 0.95989 0.96257 0.96017 1.69888 1.42462 1.42699 0.98715 0.86918 0.81733 0.82571 0.77402 1.20549 1.22487 1.19126 0.90492 0.94808 0.93462 0.88948 0.90534 0.89096 0.90635 0.91032 0.92231 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.74 37.16 0.32 -2.09 15 2 C -0.07 -1.43 2.20 -90.78 -0.20 -1.63 15 3 H 0.07 1.44 8.05 -51.93 -0.42 1.02 15 4 C -0.07 -1.14 5.73 37.21 0.21 -0.93 15 5 S -0.30 -5.25 22.33 -107.50 -2.40 -7.65 15 6 C -0.08 -1.39 6.45 37.21 0.24 -1.15 15 7 C -0.12 -2.63 4.46 -26.90 -0.12 -2.75 15 8 C 0.01 0.27 1.13 -92.20 -0.10 0.16 15 9 H 0.03 0.59 7.13 -51.92 -0.37 0.22 15 10 C -0.51 -13.65 8.38 -34.44 -0.29 -13.94 15 11 H 0.08 2.34 6.18 -52.49 -0.32 2.02 15 12 C 0.07 1.92 5.44 -17.82 -0.10 1.82 15 13 N -0.90 -26.96 13.96 55.43 0.77 -26.19 15 14 Si 0.88 21.48 24.40 -169.99 -4.15 17.33 15 15 H -0.28 -6.59 6.79 56.52 0.38 -6.20 15 16 H -0.30 -7.31 7.11 56.52 0.40 -6.91 15 17 H -0.27 -6.19 6.52 56.52 0.37 -5.82 15 18 H 0.08 1.58 5.98 -51.93 -0.31 1.26 15 19 H 0.03 0.52 8.14 -51.93 -0.42 0.09 15 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 21 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 23 H 0.09 1.48 8.14 -51.93 -0.42 1.05 15 24 H 0.07 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.07 1.51 8.05 -51.93 -0.42 1.10 15 26 H 0.06 1.35 3.12 -51.93 -0.16 1.19 15 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 LS Contribution 219.34 15.07 3.31 3.31 Total: -1.00 -28.20 219.34 -6.23 -34.43 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.73 Total: -0.73 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -0.03 Total: -20.50 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.77 Total: -26.19 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.15 Total: 17.33 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.40 Total: -7.65 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -28.20 -6.23 -34.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933055.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.068 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds