Wall clock time and date at job start Mon Mar 30 2020 02:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.30569 * 2 1 4 4 C 1.53110 * 109.36175 * 240.21421 * 2 1 3 5 5 S 1.81750 * 108.80512 * 176.78797 * 4 2 1 6 6 C 1.81746 * 102.22060 * 53.28649 * 5 4 2 7 7 C 1.53094 * 108.84199 * 306.73339 * 6 5 4 8 8 C 1.52580 * 109.95611 * 63.02500 * 7 6 5 9 9 H 1.09008 * 109.22750 * 49.60427 * 8 7 6 10 10 C 1.50701 * 109.22919 * 169.00267 * 8 7 6 11 11 H 1.08002 * 119.99761 * 120.59270 * 10 8 7 12 12 C 1.37871 * 119.99694 * 300.87833 * 10 8 7 13 13 N 1.31523 * 119.99908 * 179.72112 * 12 10 8 14 14 Si 1.86800 * 120.00405 * 359.71709 * 12 10 8 15 15 H 1.48500 * 109.47210 * 90.00069 * 14 12 10 16 16 H 1.48504 * 109.47424 * 210.00300 * 14 12 10 17 17 H 1.48502 * 109.46888 * 330.00390 * 14 12 10 18 18 H 1.08993 * 109.47663 * 300.24800 * 1 2 3 19 19 H 1.08997 * 109.47208 * 60.25270 * 1 2 3 20 20 H 1.09007 * 109.46928 * 180.24691 * 1 2 3 21 21 H 1.08998 * 109.57498 * 57.00459 * 4 2 1 22 22 H 1.08995 * 109.71824 * 296.66029 * 4 2 1 23 23 H 1.09005 * 109.57521 * 186.92257 * 6 5 4 24 24 H 1.09004 * 109.57418 * 66.54357 * 6 5 4 25 25 H 1.08997 * 109.38760 * 302.87804 * 7 6 5 26 26 H 1.08998 * 109.31039 * 183.12401 * 7 6 5 27 27 H 0.96995 * 120.00181 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8904 1.0287 0.0000 4 6 2.0376 -0.7176 -1.2537 5 16 3.8525 -0.6256 -1.2870 6 6 4.3011 -1.2828 0.3470 7 6 3.5379 -0.5023 1.4204 8 6 2.0366 -0.7141 1.2496 9 1 1.8324 -1.7812 1.1609 10 6 1.3181 -0.1704 2.4576 11 1 0.5833 0.6126 2.3417 12 6 1.6031 -0.6684 3.7112 13 7 0.9800 -0.1901 4.7661 14 14 2.8740 -2.0226 3.9116 15 1 4.2139 -1.4171 4.1198 16 1 2.5224 -2.8620 5.0852 17 1 2.8963 -2.8654 2.6891 18 1 -0.3634 0.5176 0.8877 19 1 -0.3633 0.5099 -0.8922 20 1 -0.3633 -1.0277 0.0044 21 1 1.6311 -0.2333 -2.1415 22 1 1.7252 -1.7615 -1.2317 23 1 5.3735 -1.1679 0.5050 24 1 4.0329 -2.3379 0.4025 25 1 3.7665 0.5593 1.3271 26 1 3.8430 -0.8529 2.4063 27 1 1.1802 -0.5407 5.6481 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933055.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:05 Heat of formation + Delta-G solvation = -33.350628 kcal Electronic energy + Delta-G solvation = -10094.918912 eV Core-core repulsion = 8363.550579 eV Total energy + Delta-G solvation = -1731.368333 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.90042 -34.46620 -33.49201 -29.73847 -27.82749 -24.99154 -23.11659 -20.77532 -18.97648 -17.59410 -16.74607 -15.68264 -15.35178 -14.88283 -14.59280 -14.38829 -14.01835 -13.53755 -13.18610 -12.83170 -12.51601 -12.28241 -11.96461 -11.82865 -11.54373 -11.29069 -10.90159 -10.61713 -10.42831 -8.61565 -8.27564 -6.30329 0.91631 1.27461 1.33913 1.42839 1.61869 2.31500 3.05681 3.89463 3.99259 4.03830 4.15944 4.38415 4.44121 4.64341 4.76915 4.81329 4.83852 4.93729 5.12918 5.30242 5.38578 5.49480 5.70718 5.72225 6.35158 6.77500 7.34096 8.88072 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.045612 B = 0.017804 C = 0.013745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.728676 B = 1572.319816 C = 2036.583869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 H 0.062 0.938 4 C -0.063 4.063 5 S -0.291 6.291 6 C -0.076 4.076 7 C -0.123 4.123 8 C 0.011 3.989 9 H 0.021 0.979 10 C -0.507 4.507 11 H 0.049 0.951 12 C 0.009 3.991 13 N -0.950 5.950 14 Si 0.941 3.059 15 H -0.267 1.267 16 H -0.303 1.303 17 H -0.245 1.245 18 H 0.043 0.957 19 H 0.066 0.934 20 H 0.049 0.951 21 H 0.120 0.880 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 -3.158 -10.583 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.092 4.092 3 H 0.081 0.919 4 C -0.211 4.211 5 S -0.064 6.064 6 C -0.224 4.224 7 C -0.162 4.162 8 C -0.008 4.008 9 H 0.039 0.961 10 C -0.545 4.545 11 H 0.067 0.933 12 C -0.188 4.188 13 N -0.591 5.591 14 Si 0.769 3.231 15 H -0.193 1.193 16 H -0.232 1.232 17 H -0.169 1.169 18 H 0.062 0.938 19 H 0.085 0.915 20 H 0.068 0.932 21 H 0.138 0.862 22 H 0.104 0.896 23 H 0.132 0.868 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.340 -2.819 -11.257 12.774 hybrid contribution -0.433 -0.805 1.834 2.049 sum 4.908 -3.624 -9.423 11.226 Atomic orbital electron populations 1.21710 0.94351 1.01501 1.01121 1.21101 0.96664 0.98895 0.92572 0.91905 1.23577 0.91425 1.04264 1.01807 1.86357 1.09919 1.86530 1.23608 1.23494 1.03845 1.01767 0.93280 1.22101 0.97238 1.00280 0.96543 1.19131 0.91589 0.95998 0.94065 0.96081 1.21414 1.21743 1.20346 0.90950 0.93295 1.25871 0.98223 0.98882 0.95782 1.70042 1.44843 1.44912 0.99309 0.85956 0.79533 0.79845 0.77756 1.19324 1.23152 1.16925 0.93777 0.91476 0.93231 0.86224 0.89647 0.86845 0.90026 0.91580 0.93607 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 8.74 71.98 0.63 -3.89 15 2 C -0.07 -2.66 2.20 -10.89 -0.02 -2.69 15 3 H 0.06 2.42 8.05 -2.39 -0.02 2.40 15 4 C -0.06 -1.88 5.73 72.02 0.41 -1.47 15 5 S -0.29 -9.10 22.33 -56.49 -1.26 -10.36 15 6 C -0.08 -2.49 6.45 72.01 0.46 -2.02 15 7 C -0.12 -4.97 4.46 30.49 0.14 -4.83 15 8 C 0.01 0.48 1.13 -11.82 -0.01 0.47 15 9 H 0.02 0.95 7.13 -2.38 -0.02 0.93 15 10 C -0.51 -27.62 8.38 25.60 0.21 -27.40 15 11 H 0.05 2.93 6.18 -2.91 -0.02 2.91 15 12 C 0.01 0.51 5.44 84.65 0.46 0.97 15 13 N -0.95 -58.75 13.96 21.45 0.30 -58.45 15 14 Si 0.94 44.05 24.40 68.60 1.67 45.72 15 15 H -0.27 -11.90 6.79 99.48 0.68 -11.23 15 16 H -0.30 -14.39 7.11 99.48 0.71 -13.68 15 17 H -0.25 -10.54 6.52 99.48 0.65 -9.89 15 18 H 0.04 1.83 5.98 -2.39 -0.01 1.82 15 19 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 20 H 0.05 1.70 8.14 -2.38 -0.02 1.68 15 21 H 0.12 2.98 8.14 -2.39 -0.02 2.96 15 22 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.11 3.23 8.14 -2.39 -0.02 3.21 15 24 H 0.08 2.60 8.14 -2.39 -0.02 2.59 15 25 H 0.07 2.70 8.05 -2.39 -0.02 2.69 15 26 H 0.05 1.98 3.12 -2.39 -0.01 1.97 15 27 H 0.26 15.38 8.31 -92.71 -0.77 14.61 15 Total: -1.00 -60.72 219.34 4.04 -56.67 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.05 Total: 7.28 kcal Atomic # 6 Polarization: -43.15 SS G_CDS: 2.28 Total: -40.86 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.67 Total: 45.72 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.26 Total: -10.36 kcal Total: -60.72 4.04 -56.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933055.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.323 kcal (2) G-P(sol) polarization free energy of solvation -60.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds