Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.30927 * 2 1 4 4 C 1.53108 * 109.42811 * 119.74063 * 2 1 3 5 5 S 1.81752 * 108.80959 * 57.08283 * 4 2 1 6 6 C 1.81743 * 102.22081 * 53.28445 * 5 4 2 7 7 C 1.53105 * 108.84352 * 306.73467 * 6 5 4 8 8 C 1.52581 * 109.38903 * 240.24821 * 2 1 3 9 9 H 1.09001 * 109.22807 * 190.25000 * 8 2 1 10 10 C 1.50698 * 109.22864 * 70.84706 * 8 2 1 11 11 H 1.07998 * 120.00214 * 353.85413 * 10 8 2 12 12 C 1.37880 * 120.00465 * 173.85216 * 10 8 2 13 13 N 1.31506 * 120.00680 * 164.00346 * 12 10 8 14 14 Si 1.86811 * 119.99417 * 344.00285 * 12 10 8 15 15 H 1.48504 * 109.46854 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47350 * 299.99588 * 14 12 10 17 17 H 1.48502 * 109.46979 * 60.00230 * 14 12 10 18 18 H 1.09004 * 109.46905 * 179.74851 * 1 2 3 19 19 H 1.08990 * 109.46907 * 299.75543 * 1 2 3 20 20 H 1.09002 * 109.46693 * 59.75138 * 1 2 3 21 21 H 1.08996 * 109.57879 * 297.29759 * 4 2 1 22 22 H 1.09002 * 109.71719 * 176.95040 * 4 2 1 23 23 H 1.09003 * 109.57979 * 186.93321 * 6 5 4 24 24 H 1.09002 * 109.57899 * 66.54490 * 6 5 4 25 25 H 1.08998 * 109.38675 * 302.87976 * 7 6 5 26 26 H 1.08995 * 109.39140 * 183.17055 * 7 6 5 27 27 H 0.96998 * 119.99489 * 354.59005 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8905 1.0287 0.0000 4 6 2.0393 -0.7163 1.2537 5 16 1.3525 -2.3987 1.2871 6 6 1.8246 -3.0395 -0.3468 7 6 1.3403 -2.0612 -1.4204 8 6 2.0366 -0.7142 -1.2496 9 1 3.1111 -0.8744 -1.1607 10 6 1.7610 0.1435 -2.4576 11 1 1.1867 1.0524 -2.3549 12 6 2.2420 -0.2319 -3.6940 13 7 1.7556 0.3198 -4.7841 14 14 3.5847 -1.5246 -3.8206 15 1 3.9230 -1.7485 -5.2491 16 1 4.7918 -1.0574 -3.0929 17 1 3.1060 -2.7959 -3.2206 18 1 -0.3633 -1.0277 -0.0045 19 1 -0.3633 0.5100 0.8921 20 1 -0.3633 0.5177 -0.8878 21 1 1.7167 -0.1725 2.1415 22 1 3.1280 -0.7666 1.2318 23 1 1.3615 -4.0135 -0.5049 24 1 2.9090 -3.1352 -0.4023 25 1 0.2628 -1.9259 -1.3271 26 1 1.5690 -2.4642 -2.4069 27 1 1.0057 0.9321 -4.7246 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933056.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = -21.124042 kcal Electronic energy + Delta-G solvation = -10152.257609 eV Core-core repulsion = 8421.419461 eV Total energy + Delta-G solvation = -1730.838148 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -37.36259 -32.52980 -31.38771 -27.66421 -26.62270 -22.54777 -21.94407 -18.43863 -17.47195 -16.27930 -14.29601 -14.13438 -13.61620 -13.44964 -13.31907 -12.56854 -12.29996 -11.77630 -11.27266 -11.11286 -10.73941 -10.46612 -10.38669 -10.01862 -9.68118 -9.47307 -8.97519 -8.76751 -8.31605 -7.15914 -6.44654 -4.08730 2.31807 3.02477 3.34069 3.39945 3.57639 4.47219 5.18209 5.42319 5.48600 5.59176 5.69594 5.82546 6.00649 6.12462 6.20671 6.39126 6.51494 6.67916 6.83007 6.93080 7.04749 7.20816 7.49119 8.09962 8.36197 8.87604 9.58719 10.92096 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.051518 B = 0.016697 C = 0.014219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.373049 B = 1676.495868 C = 1968.676053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 H 0.070 0.930 4 C -0.070 4.070 5 S -0.298 6.298 6 C -0.075 4.075 7 C -0.129 4.129 8 C 0.019 3.981 9 H 0.018 0.982 10 C -0.591 4.591 11 H 0.058 0.942 12 C 0.031 3.969 13 N -0.908 5.908 14 Si 1.039 2.961 15 H -0.287 1.287 16 H -0.285 1.285 17 H -0.273 1.273 18 H 0.068 0.932 19 H 0.033 0.967 20 H 0.059 0.941 21 H 0.090 0.910 22 H 0.075 0.925 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -4.402 8.893 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.096 4.096 3 H 0.089 0.911 4 C -0.218 4.218 5 S -0.072 6.072 6 C -0.223 4.223 7 C -0.168 4.168 8 C 0.000 4.000 9 H 0.036 0.964 10 C -0.628 4.628 11 H 0.076 0.924 12 C -0.174 4.174 13 N -0.542 5.542 14 Si 0.868 3.132 15 H -0.213 1.213 16 H -0.211 1.211 17 H -0.200 1.200 18 H 0.087 0.913 19 H 0.052 0.948 20 H 0.078 0.922 21 H 0.108 0.892 22 H 0.094 0.906 23 H 0.108 0.892 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.882 -5.695 8.630 10.378 hybrid contribution -0.281 1.421 0.163 1.458 sum 0.601 -4.274 8.793 9.795 Atomic orbital electron populations 1.21923 0.95194 1.02467 1.00156 1.21128 0.96447 0.99167 0.92908 0.91146 1.23615 1.02176 0.93655 1.02389 1.86250 1.78422 1.17467 1.25076 1.23560 1.03267 1.01616 0.93873 1.22395 1.01836 0.95829 0.96736 1.18948 0.94540 0.92376 0.94171 0.96402 1.21967 1.38690 1.09611 0.92580 0.92388 1.25737 0.99862 0.99782 0.92020 1.70829 1.24403 1.29332 1.29602 0.84147 0.76553 0.76569 0.75932 1.21261 1.21144 1.19968 0.91326 0.94827 0.92235 0.89181 0.90619 0.89183 0.90819 0.91057 0.91013 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.14 37.16 0.30 -2.36 15 2 C -0.08 -1.52 2.53 -90.78 -0.23 -1.75 15 3 H 0.07 1.43 8.08 -51.93 -0.42 1.01 15 4 C -0.07 -1.20 6.00 37.21 0.22 -0.97 15 5 S -0.30 -5.17 20.78 -107.50 -2.23 -7.41 15 6 C -0.08 -1.35 6.45 37.21 0.24 -1.11 15 7 C -0.13 -2.72 4.43 -26.89 -0.12 -2.84 15 8 C 0.02 0.43 1.23 -92.20 -0.11 0.31 15 9 H 0.02 0.42 6.75 -51.93 -0.35 0.07 15 10 C -0.59 -16.01 8.22 -34.44 -0.28 -16.29 15 11 H 0.06 1.70 7.47 -52.49 -0.39 1.30 15 12 C 0.03 0.87 5.27 -17.82 -0.09 0.77 15 13 N -0.91 -27.49 13.69 55.43 0.76 -26.73 15 14 Si 1.04 24.70 26.18 -169.99 -4.45 20.25 15 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.27 -5.91 5.75 56.52 0.32 -5.59 15 18 H 0.07 1.30 4.93 -51.93 -0.26 1.05 15 19 H 0.03 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.06 1.24 7.21 -51.93 -0.37 0.86 15 21 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 22 H 0.08 1.25 8.14 -51.93 -0.42 0.82 15 23 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 15 25 H 0.07 1.51 5.78 -51.93 -0.30 1.21 15 26 H 0.07 1.61 4.72 -51.93 -0.24 1.37 15 27 H 0.27 8.08 8.73 -40.82 -0.36 7.73 15 LS Contribution 217.26 15.07 3.27 3.27 Total: -1.00 -28.31 217.26 -6.40 -34.71 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -3.68 Total: 0.13 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.76 Total: -26.73 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.45 Total: 20.25 kcal Atomic # 16 Polarization: -5.17 SS G_CDS: -2.23 Total: -7.41 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.31 -6.40 -34.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933056.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.587 kcal (2) G-P(sol) polarization free energy of solvation -28.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds