Wall clock time and date at job start Mon Mar 30 2020 02:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.30927 * 2 1 4 4 C 1.53108 * 109.42811 * 119.74063 * 2 1 3 5 5 S 1.81752 * 108.80959 * 57.08283 * 4 2 1 6 6 C 1.81743 * 102.22081 * 53.28445 * 5 4 2 7 7 C 1.53105 * 108.84352 * 306.73467 * 6 5 4 8 8 C 1.52581 * 109.38903 * 240.24821 * 2 1 3 9 9 H 1.09001 * 109.22807 * 190.25000 * 8 2 1 10 10 C 1.50698 * 109.22864 * 70.84706 * 8 2 1 11 11 H 1.07998 * 120.00214 * 353.85413 * 10 8 2 12 12 C 1.37880 * 120.00465 * 173.85216 * 10 8 2 13 13 N 1.31506 * 120.00680 * 164.00346 * 12 10 8 14 14 Si 1.86811 * 119.99417 * 344.00285 * 12 10 8 15 15 H 1.48504 * 109.46854 * 179.97438 * 14 12 10 16 16 H 1.48498 * 109.47350 * 299.99588 * 14 12 10 17 17 H 1.48502 * 109.46979 * 60.00230 * 14 12 10 18 18 H 1.09004 * 109.46905 * 179.74851 * 1 2 3 19 19 H 1.08990 * 109.46907 * 299.75543 * 1 2 3 20 20 H 1.09002 * 109.46693 * 59.75138 * 1 2 3 21 21 H 1.08996 * 109.57879 * 297.29759 * 4 2 1 22 22 H 1.09002 * 109.71719 * 176.95040 * 4 2 1 23 23 H 1.09003 * 109.57979 * 186.93321 * 6 5 4 24 24 H 1.09002 * 109.57899 * 66.54490 * 6 5 4 25 25 H 1.08998 * 109.38675 * 302.87976 * 7 6 5 26 26 H 1.08995 * 109.39140 * 183.17055 * 7 6 5 27 27 H 0.96998 * 119.99489 * 354.59005 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8905 1.0287 0.0000 4 6 2.0393 -0.7163 1.2537 5 16 1.3525 -2.3987 1.2871 6 6 1.8246 -3.0395 -0.3468 7 6 1.3403 -2.0612 -1.4204 8 6 2.0366 -0.7142 -1.2496 9 1 3.1111 -0.8744 -1.1607 10 6 1.7610 0.1435 -2.4576 11 1 1.1867 1.0524 -2.3549 12 6 2.2420 -0.2319 -3.6940 13 7 1.7556 0.3198 -4.7841 14 14 3.5847 -1.5246 -3.8206 15 1 3.9230 -1.7485 -5.2491 16 1 4.7918 -1.0574 -3.0929 17 1 3.1060 -2.7959 -3.2206 18 1 -0.3633 -1.0277 -0.0045 19 1 -0.3633 0.5100 0.8921 20 1 -0.3633 0.5177 -0.8878 21 1 1.7167 -0.1725 2.1415 22 1 3.1280 -0.7666 1.2318 23 1 1.3615 -4.0135 -0.5049 24 1 2.9090 -3.1352 -0.4023 25 1 0.2628 -1.9259 -1.3271 26 1 1.5690 -2.4642 -2.4069 27 1 1.0057 0.9321 -4.7246 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933056.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:06 Heat of formation + Delta-G solvation = -38.071043 kcal Electronic energy + Delta-G solvation = -10152.992486 eV Core-core repulsion = 8421.419461 eV Total energy + Delta-G solvation = -1731.573025 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.05387 -34.60696 -32.97466 -29.44701 -28.15222 -24.45159 -23.55265 -20.20683 -19.48564 -17.79867 -15.97199 -15.82625 -15.24844 -15.02629 -14.91614 -14.27832 -13.83588 -13.58883 -12.86119 -12.75739 -12.50682 -12.15817 -12.04993 -11.70468 -11.42069 -11.24078 -10.73878 -10.55594 -10.36747 -8.72127 -8.48265 -6.33375 0.95520 1.44589 1.51060 1.64885 1.70506 2.50220 3.06178 3.97323 3.98656 4.09796 4.21369 4.32753 4.51482 4.71109 4.72959 4.77404 4.90490 5.01643 5.16966 5.28895 5.41038 5.47021 5.77449 6.04727 6.11696 6.60148 7.42945 8.66468 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.051518 B = 0.016697 C = 0.014219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.373049 B = 1676.495868 C = 1968.676053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.078 4.078 3 H 0.059 0.941 4 C -0.066 4.066 5 S -0.284 6.284 6 C -0.075 4.075 7 C -0.125 4.125 8 C 0.016 3.984 9 H 0.020 0.980 10 C -0.588 4.588 11 H 0.019 0.981 12 C -0.022 4.022 13 N -0.945 5.945 14 Si 1.076 2.924 15 H -0.295 1.295 16 H -0.268 1.268 17 H -0.236 1.236 18 H 0.071 0.929 19 H 0.058 0.942 20 H 0.028 0.972 21 H 0.115 0.885 22 H 0.085 0.915 23 H 0.113 0.887 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -6.176 10.958 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.214 4.214 5 S -0.058 6.058 6 C -0.223 4.223 7 C -0.164 4.164 8 C -0.003 4.003 9 H 0.038 0.962 10 C -0.626 4.626 11 H 0.038 0.962 12 C -0.219 4.219 13 N -0.581 5.581 14 Si 0.898 3.102 15 H -0.222 1.222 16 H -0.194 1.194 17 H -0.160 1.160 18 H 0.089 0.911 19 H 0.077 0.923 20 H 0.047 0.953 21 H 0.133 0.867 22 H 0.104 0.896 23 H 0.131 0.869 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.716 -7.468 10.732 13.187 hybrid contribution -0.617 2.075 -0.446 2.211 sum 1.099 -5.392 10.286 11.666 Atomic orbital electron populations 1.21845 0.94825 1.02478 0.99921 1.21062 0.96788 0.98711 0.93268 0.92269 1.23577 1.02803 0.93577 1.01482 1.86278 1.78439 1.17099 1.23959 1.23526 1.04096 1.01663 0.93034 1.22201 1.01258 0.95516 0.97447 1.18948 0.94955 0.92871 0.93516 0.96187 1.22198 1.36981 1.08760 0.94648 0.96246 1.27146 1.01598 1.01386 0.91819 1.70960 1.25201 1.31019 1.30912 0.83713 0.74540 0.75979 0.75986 1.22164 1.19379 1.15985 0.91075 0.92266 0.95310 0.86668 0.89604 0.86876 0.89760 0.91785 0.92446 0.93993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.91 8.14 71.98 0.59 -4.33 15 2 C -0.08 -2.97 2.53 -10.89 -0.03 -3.00 15 3 H 0.06 2.36 8.08 -2.39 -0.02 2.34 15 4 C -0.07 -2.02 6.00 72.02 0.43 -1.59 15 5 S -0.28 -8.71 20.78 -56.49 -1.17 -9.89 15 6 C -0.08 -2.40 6.45 72.02 0.46 -1.94 15 7 C -0.13 -5.01 4.43 30.49 0.14 -4.88 15 8 C 0.02 0.72 1.23 -11.82 -0.01 0.70 15 9 H 0.02 0.89 6.75 -2.39 -0.02 0.87 15 10 C -0.59 -32.49 8.22 25.60 0.21 -32.28 15 11 H 0.02 1.19 7.47 -2.91 -0.02 1.16 15 12 C -0.02 -1.27 5.27 84.66 0.45 -0.82 15 13 N -0.94 -59.17 13.69 21.45 0.29 -58.88 15 14 Si 1.08 48.86 26.18 68.60 1.80 50.66 15 15 H -0.30 -13.78 7.11 99.48 0.71 -13.08 15 16 H -0.27 -11.41 7.11 99.48 0.71 -10.71 15 17 H -0.24 -9.25 5.75 99.48 0.57 -8.67 15 18 H 0.07 2.57 4.93 -2.38 -0.01 2.56 15 19 H 0.06 1.85 8.14 -2.39 -0.02 1.83 15 20 H 0.03 1.20 7.21 -2.39 -0.02 1.18 15 21 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.09 2.48 8.14 -2.39 -0.02 2.46 15 23 H 0.11 3.13 8.14 -2.39 -0.02 3.11 15 24 H 0.08 2.56 8.14 -2.39 -0.02 2.54 15 25 H 0.06 2.63 5.78 -2.39 -0.01 2.61 15 26 H 0.06 2.45 4.72 -2.39 -0.01 2.44 15 27 H 0.25 16.00 8.73 -92.71 -0.81 15.20 15 Total: -1.00 -61.55 217.26 4.12 -57.44 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: 0.97 Total: 8.80 kcal Atomic # 6 Polarization: -50.36 SS G_CDS: 2.23 Total: -48.13 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.29 Total: -58.88 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.80 Total: 50.66 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.17 Total: -9.89 kcal Total: -61.55 4.12 -57.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933056.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.368 kcal (2) G-P(sol) polarization free energy of solvation -61.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds