Wall clock time and date at job start Mon Mar 30 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.39443 * 2 1 4 4 C 1.53099 * 109.30628 * 240.24918 * 2 1 3 5 5 S 1.82094 * 108.89552 * 302.91606 * 4 2 1 6 6 C 1.81750 * 102.08448 * 306.79811 * 5 4 2 7 7 C 1.53098 * 108.94655 * 53.22466 * 6 5 4 8 8 C 1.52575 * 109.95645 * 296.91281 * 7 6 5 9 9 H 1.09002 * 109.22829 * 310.35124 * 8 7 6 10 10 C 1.50706 * 109.22697 * 190.95404 * 8 7 6 11 11 H 1.07998 * 119.99918 * 239.99974 * 10 8 7 12 12 C 1.37875 * 119.99692 * 59.99739 * 10 8 7 13 13 N 1.31509 * 120.00519 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 119.99681 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46814 * 60.00537 * 14 12 10 16 16 H 1.48499 * 109.47117 * 179.97438 * 14 12 10 17 17 H 1.48490 * 109.47511 * 300.00374 * 14 12 10 18 18 H 1.09005 * 109.46413 * 300.19660 * 1 2 3 19 19 H 1.08999 * 109.47106 * 60.19370 * 1 2 3 20 20 H 1.08993 * 109.47503 * 180.20119 * 1 2 3 21 21 H 1.09000 * 109.57606 * 62.73277 * 4 2 1 22 22 H 1.08999 * 109.57794 * 182.99067 * 4 2 1 23 23 H 1.09002 * 109.57630 * 293.35295 * 6 5 4 24 24 H 1.09001 * 109.57403 * 173.09470 * 6 5 4 25 25 H 1.09000 * 109.38965 * 57.05882 * 7 6 5 26 26 H 1.08996 * 109.38952 * 176.76319 * 7 6 5 27 27 H 0.96993 * 120.00579 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0362 -0.7170 -1.2544 5 16 1.3476 -2.4024 -1.2887 6 6 1.8214 -3.0403 0.3459 7 6 1.3394 -2.0617 1.4202 8 6 2.0366 -0.7154 1.2488 9 1 3.1110 -0.8764 1.1594 10 6 1.7624 0.1428 2.4569 11 1 1.2585 1.0911 2.3425 12 6 2.1549 -0.2828 3.7082 13 7 2.7689 -1.4374 3.8476 14 14 1.8157 0.7813 5.2056 15 1 0.3520 0.9926 5.3412 16 1 2.3321 0.1035 6.4218 17 1 2.4924 2.0931 5.0442 18 1 -0.3632 0.5169 0.8883 19 1 -0.3633 0.5108 -0.8917 20 1 -0.3634 -1.0276 0.0036 21 1 1.7129 -0.1727 -2.1417 22 1 3.1248 -0.7663 -1.2327 23 1 2.9058 -3.1369 0.4000 24 1 1.3595 -4.0145 0.5057 25 1 0.2619 -1.9255 1.3284 26 1 1.5690 -2.4652 2.4064 27 1 3.0453 -1.7367 4.7278 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933058.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:07 Heat of formation + Delta-G solvation = -35.795334 kcal Electronic energy + Delta-G solvation = -10098.541215 eV Core-core repulsion = 8367.066872 eV Total energy + Delta-G solvation = -1731.474343 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.83340 -34.48198 -32.59266 -29.24133 -27.98548 -25.18275 -23.30217 -20.04393 -18.45420 -17.57434 -16.51130 -15.38933 -15.28868 -14.92012 -14.61379 -14.00403 -13.65386 -13.42490 -12.81576 -12.75792 -12.60642 -12.27678 -12.12309 -11.71700 -11.37736 -11.08043 -10.73812 -10.56532 -10.20947 -8.49137 -8.05933 -6.21518 1.03484 1.42398 1.42831 1.50168 1.70335 2.43368 3.18280 4.09953 4.11147 4.22921 4.39123 4.44539 4.68221 4.78914 4.85595 4.94357 5.12557 5.31230 5.36676 5.47522 5.61192 5.62006 5.95047 6.14346 6.38800 6.88642 7.46148 8.95294 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064660 B = 0.013659 C = 0.012239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.929057 B = 2049.497649 C = 2287.289062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.085 4.085 3 H 0.065 0.935 4 C -0.062 4.062 5 S -0.294 6.294 6 C -0.064 4.064 7 C -0.110 4.110 8 C 0.046 3.954 9 H -0.010 1.010 10 C -0.523 4.523 11 H 0.054 0.946 12 C 0.012 3.988 13 N -0.916 5.916 14 Si 0.950 3.050 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.273 1.273 18 H 0.042 0.958 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.116 0.884 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 0.342 -6.439 6.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.105 4.105 3 H 0.083 0.917 4 C -0.210 4.210 5 S -0.068 6.068 6 C -0.212 4.212 7 C -0.149 4.149 8 C 0.028 3.972 9 H 0.008 0.992 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.186 4.186 13 N -0.556 5.556 14 Si 0.776 3.224 15 H -0.197 1.197 16 H -0.212 1.212 17 H -0.199 1.199 18 H 0.061 0.939 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.134 0.866 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.094 -0.295 -7.135 7.783 hybrid contribution 0.832 0.952 2.041 2.401 sum -2.262 0.657 -5.094 5.612 Atomic orbital electron populations 1.21841 0.94358 1.02353 1.00478 1.21214 0.97153 0.98779 0.93367 0.91682 1.23577 1.02115 0.93314 1.02014 1.86147 1.78276 1.17781 1.24592 1.23412 1.02792 1.01625 0.93367 1.21690 0.99010 0.95951 0.98267 1.18568 0.93552 0.92732 0.92364 0.99205 1.21487 1.37457 1.04581 0.92555 0.92774 1.25694 0.95080 0.96242 1.01601 1.69973 1.40759 1.21071 1.23797 0.85740 0.78602 0.79068 0.79024 1.19710 1.21202 1.19873 0.93897 0.92285 0.91737 0.86585 0.90803 0.91716 0.88172 0.92919 0.90934 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 8.13 71.98 0.59 -4.27 15 2 C -0.09 -3.37 2.54 -10.90 -0.03 -3.39 15 3 H 0.06 2.57 8.08 -2.39 -0.02 2.55 15 4 C -0.06 -2.11 6.00 72.02 0.43 -1.68 15 5 S -0.29 -10.32 20.81 -56.49 -1.18 -11.50 15 6 C -0.06 -2.50 6.45 72.01 0.46 -2.04 15 7 C -0.11 -5.06 4.73 30.49 0.14 -4.92 15 8 C 0.05 2.24 1.62 -11.82 -0.02 2.22 15 9 H -0.01 -0.55 8.08 -2.39 -0.02 -0.57 15 10 C -0.52 -27.88 7.87 25.60 0.20 -27.68 15 11 H 0.05 2.84 7.39 -2.91 -0.02 2.82 15 12 C 0.01 0.66 5.25 84.65 0.44 1.11 15 13 N -0.92 -51.79 11.29 21.45 0.24 -51.55 15 14 Si 0.95 42.94 29.54 68.60 2.03 44.97 15 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 16 H -0.29 -12.81 7.11 99.48 0.71 -12.10 15 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 18 H 0.04 1.67 7.32 -2.38 -0.02 1.65 15 19 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 20 H 0.06 2.41 4.93 -2.39 -0.01 2.40 15 21 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 22 H 0.07 2.51 8.14 -2.39 -0.02 2.49 15 23 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 24 H 0.10 3.53 8.14 -2.39 -0.02 3.51 15 25 H 0.05 2.38 5.78 -2.39 -0.01 2.36 15 26 H 0.07 3.82 5.81 -2.39 -0.01 3.81 15 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 15 Total: -1.00 -55.93 221.95 4.45 -51.48 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.14 Total: 7.25 kcal Atomic # 6 Polarization: -42.87 SS G_CDS: 2.22 Total: -40.64 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.24 Total: -51.55 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -10.32 SS G_CDS: -1.18 Total: -11.50 kcal Total: -55.93 4.45 -51.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933058.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.682 kcal (2) G-P(sol) polarization free energy of solvation -55.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds