Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.39198 * 2 1 4 4 C 1.53097 * 109.38962 * 119.79711 * 2 1 3 5 5 S 1.81751 * 108.94771 * 183.10768 * 4 2 1 6 6 C 1.81795 * 102.20262 * 306.90872 * 5 4 2 7 7 C 1.53091 * 108.94108 * 53.09011 * 6 5 4 8 8 C 1.52582 * 109.39082 * 240.29201 * 2 1 3 9 9 H 1.09000 * 109.22951 * 289.45711 * 8 2 1 10 10 C 1.50698 * 109.22406 * 48.85672 * 8 2 1 11 11 H 1.08006 * 120.00015 * 5.57168 * 10 8 2 12 12 C 1.37874 * 120.00080 * 185.57056 * 10 8 2 13 13 N 1.31512 * 120.00193 * 8.85193 * 12 10 8 14 14 Si 1.86808 * 120.00078 * 188.85278 * 12 10 8 15 15 H 1.48507 * 109.46821 * 94.99745 * 14 12 10 16 16 H 1.48500 * 109.46875 * 214.99336 * 14 12 10 17 17 H 1.48495 * 109.47096 * 334.99573 * 14 12 10 18 18 H 1.09002 * 109.47503 * 300.19963 * 1 2 3 19 19 H 1.08997 * 109.46999 * 60.19774 * 1 2 3 20 20 H 1.09003 * 109.47023 * 180.19967 * 1 2 3 21 21 H 1.08999 * 109.58157 * 302.98134 * 4 2 1 22 22 H 1.09007 * 109.57267 * 63.23906 * 4 2 1 23 23 H 1.08998 * 109.46419 * 293.29027 * 6 5 4 24 24 H 1.09000 * 109.69266 * 173.02740 * 6 5 4 25 25 H 1.08998 * 109.39713 * 176.89612 * 7 6 5 26 26 H 1.09004 * 109.39211 * 57.19480 * 7 6 5 27 27 H 0.97002 * 120.00457 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0382 -0.7176 1.2532 5 16 3.8533 -0.6302 1.2881 6 6 4.3010 -1.2837 -0.3482 7 6 3.5380 -0.5023 -1.4211 8 6 2.0365 -0.7133 -1.2501 9 1 1.8324 -1.7804 -1.1622 10 6 1.3182 -0.1685 -2.4577 11 1 0.6432 0.6680 -2.3526 12 6 1.5226 -0.7381 -3.6965 13 7 2.2032 -1.8585 -3.8009 14 14 0.8329 0.0818 -5.2268 15 1 1.8773 0.9400 -5.8419 16 1 0.4117 -0.9589 -6.1987 17 1 -0.3383 0.9161 -4.8561 18 1 -0.3634 0.5169 0.8882 19 1 -0.3633 0.5107 -0.8917 20 1 -0.3633 -1.0277 0.0036 21 1 1.6322 -0.2335 2.1414 22 1 1.7232 -1.7609 1.2296 23 1 4.0320 -2.3385 -0.4041 24 1 5.3734 -1.1712 -0.5078 25 1 3.8423 -0.8509 -2.4080 26 1 3.7673 0.5592 -1.3274 27 1 2.3467 -2.2595 -4.6725 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260933060.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -26.906563 kcal Electronic energy + Delta-G solvation = -10013.770614 eV Core-core repulsion = 8282.681717 eV Total energy + Delta-G solvation = -1731.088897 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.88116 -32.50141 -31.35229 -27.52702 -26.10572 -23.41577 -21.00680 -19.02005 -16.50795 -15.88349 -14.68921 -13.95847 -13.45940 -13.02079 -12.59355 -12.51937 -11.84712 -11.76273 -11.51229 -10.95147 -10.76165 -10.65238 -10.28596 -10.09927 -9.55921 -9.46038 -8.92251 -8.67386 -8.35017 -7.07060 -6.06244 -4.08295 2.51711 3.21906 3.27499 3.35424 3.37766 4.40167 5.24148 5.56612 5.63332 5.83703 5.99773 6.03793 6.18035 6.33632 6.38828 6.48399 6.77815 6.95336 7.05506 7.14155 7.22992 7.62366 7.87359 7.94498 8.37533 8.94595 9.55123 11.02055 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.055291 B = 0.014025 C = 0.011957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.294057 B = 1995.963050 C = 2341.129957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 H 0.065 0.935 4 C -0.062 4.062 5 S -0.320 6.320 6 C -0.064 4.064 7 C -0.106 4.106 8 C 0.045 3.955 9 H 0.032 0.968 10 C -0.510 4.510 11 H 0.061 0.939 12 C 0.062 3.938 13 N -0.889 5.889 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.274 1.274 18 H 0.029 0.971 19 H 0.070 0.930 20 H 0.046 0.954 21 H 0.086 0.914 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.087 0.913 26 H 0.046 0.954 27 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 1.580 5.524 5.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.210 4.210 5 S -0.093 6.093 6 C -0.212 4.212 7 C -0.146 4.146 8 C 0.026 3.974 9 H 0.050 0.950 10 C -0.547 4.547 11 H 0.079 0.921 12 C -0.140 4.140 13 N -0.527 5.527 14 Si 0.714 3.286 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.199 1.199 18 H 0.049 0.951 19 H 0.089 0.911 20 H 0.065 0.935 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.042 1.790 6.228 6.563 hybrid contribution -1.014 -0.122 -1.851 2.114 sum 0.028 1.668 4.377 4.684 Atomic orbital electron populations 1.21751 0.95432 1.01173 1.00480 1.21370 0.95694 0.99407 0.93972 0.91699 1.23509 0.91727 1.03679 1.02123 1.86240 1.09738 1.87018 1.26322 1.23536 1.02391 1.02316 0.92954 1.21771 0.97655 0.97455 0.97681 1.18658 0.91053 0.96382 0.91280 0.95017 1.21191 1.25723 1.15985 0.91849 0.92110 1.24975 0.95425 0.94557 0.99017 1.69958 1.41358 1.17348 1.24072 0.86667 0.79300 0.79323 0.83278 1.20729 1.21360 1.19875 0.95145 0.91102 0.93472 0.89547 0.90708 0.90640 0.89801 0.89469 0.93506 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.75 37.16 0.33 -2.10 15 2 C -0.08 -1.72 2.20 -90.79 -0.20 -1.92 15 3 H 0.06 1.35 8.05 -51.93 -0.42 0.94 15 4 C -0.06 -1.13 5.73 37.21 0.21 -0.92 15 5 S -0.32 -6.04 22.34 -107.50 -2.40 -8.44 15 6 C -0.06 -1.27 6.45 37.20 0.24 -1.03 15 7 C -0.11 -2.42 4.96 -26.90 -0.13 -2.56 15 8 C 0.04 1.07 1.39 -92.20 -0.13 0.94 15 9 H 0.03 0.84 8.03 -51.93 -0.42 0.43 15 10 C -0.51 -13.34 7.60 -34.44 -0.26 -13.60 15 11 H 0.06 1.57 6.15 -52.48 -0.32 1.25 15 12 C 0.06 1.66 5.09 -17.82 -0.09 1.57 15 13 N -0.89 -24.80 12.06 55.43 0.67 -24.14 15 14 Si 0.89 20.80 29.55 -169.99 -5.02 15.78 15 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 18 H 0.03 0.48 8.14 -51.93 -0.42 0.06 15 19 H 0.07 1.42 6.05 -51.93 -0.31 1.11 15 20 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 22 H 0.07 1.36 8.14 -51.92 -0.42 0.93 15 23 H 0.07 1.52 8.14 -51.93 -0.42 1.10 15 24 H 0.08 1.51 8.14 -51.93 -0.42 1.09 15 25 H 0.09 2.21 6.55 -51.93 -0.34 1.87 15 26 H 0.05 1.06 8.05 -51.93 -0.42 0.64 15 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 LS Contribution 227.49 15.07 3.43 3.43 Total: -1.00 -26.77 227.49 -7.26 -34.03 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.90 Total: -1.04 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -0.04 Total: -19.62 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.67 Total: -24.14 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: -6.04 SS G_CDS: -2.40 Total: -8.44 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -26.77 -7.26 -34.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933060.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.126 kcal (2) G-P(sol) polarization free energy of solvation -26.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds