Wall clock time and date at job start Mon Mar 30 2020 02:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.39198 * 2 1 4 4 C 1.53097 * 109.38962 * 119.79711 * 2 1 3 5 5 S 1.81751 * 108.94771 * 183.10768 * 4 2 1 6 6 C 1.81795 * 102.20262 * 306.90872 * 5 4 2 7 7 C 1.53091 * 108.94108 * 53.09011 * 6 5 4 8 8 C 1.52582 * 109.39082 * 240.29201 * 2 1 3 9 9 H 1.09000 * 109.22951 * 289.45711 * 8 2 1 10 10 C 1.50698 * 109.22406 * 48.85672 * 8 2 1 11 11 H 1.08006 * 120.00015 * 5.57168 * 10 8 2 12 12 C 1.37874 * 120.00080 * 185.57056 * 10 8 2 13 13 N 1.31512 * 120.00193 * 8.85193 * 12 10 8 14 14 Si 1.86808 * 120.00078 * 188.85278 * 12 10 8 15 15 H 1.48507 * 109.46821 * 94.99745 * 14 12 10 16 16 H 1.48500 * 109.46875 * 214.99336 * 14 12 10 17 17 H 1.48495 * 109.47096 * 334.99573 * 14 12 10 18 18 H 1.09002 * 109.47503 * 300.19963 * 1 2 3 19 19 H 1.08997 * 109.46999 * 60.19774 * 1 2 3 20 20 H 1.09003 * 109.47023 * 180.19967 * 1 2 3 21 21 H 1.08999 * 109.58157 * 302.98134 * 4 2 1 22 22 H 1.09007 * 109.57267 * 63.23906 * 4 2 1 23 23 H 1.08998 * 109.46419 * 293.29027 * 6 5 4 24 24 H 1.09000 * 109.69266 * 173.02740 * 6 5 4 25 25 H 1.08998 * 109.39713 * 176.89612 * 7 6 5 26 26 H 1.09004 * 109.39211 * 57.19480 * 7 6 5 27 27 H 0.97002 * 120.00457 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8919 1.0282 0.0000 4 6 2.0382 -0.7176 1.2532 5 16 3.8533 -0.6302 1.2881 6 6 4.3010 -1.2837 -0.3482 7 6 3.5380 -0.5023 -1.4211 8 6 2.0365 -0.7133 -1.2501 9 1 1.8324 -1.7804 -1.1622 10 6 1.3182 -0.1685 -2.4577 11 1 0.6432 0.6680 -2.3526 12 6 1.5226 -0.7381 -3.6965 13 7 2.2032 -1.8585 -3.8009 14 14 0.8329 0.0818 -5.2268 15 1 1.8773 0.9400 -5.8419 16 1 0.4117 -0.9589 -6.1987 17 1 -0.3383 0.9161 -4.8561 18 1 -0.3634 0.5169 0.8882 19 1 -0.3633 0.5107 -0.8917 20 1 -0.3633 -1.0277 0.0036 21 1 1.6322 -0.2335 2.1414 22 1 1.7232 -1.7609 1.2296 23 1 4.0320 -2.3385 -0.4041 24 1 5.3734 -1.1712 -0.5078 25 1 3.8423 -0.8509 -2.4080 26 1 3.7673 0.5592 -1.3274 27 1 2.3467 -2.2595 -4.6725 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260933060.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:09 Heat of formation + Delta-G solvation = -40.841456 kcal Electronic energy + Delta-G solvation = -10014.374876 eV Core-core repulsion = 8282.681717 eV Total energy + Delta-G solvation = -1731.693159 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.63360 -34.42167 -33.09488 -29.31841 -27.68981 -25.31831 -22.72255 -20.77103 -18.50311 -17.45609 -16.59840 -15.59647 -15.20354 -14.70209 -14.27680 -14.16768 -13.70890 -13.38864 -13.05867 -12.81165 -12.52205 -12.33528 -12.10658 -11.89129 -11.34502 -11.22556 -10.70222 -10.47171 -10.31367 -8.59923 -8.10511 -6.18588 0.99643 1.40482 1.43343 1.51704 1.67169 2.43920 3.18632 4.00730 4.09855 4.21661 4.33248 4.51581 4.61600 4.75027 4.83464 4.91805 5.05275 5.23124 5.37935 5.39608 5.52025 5.66845 5.95142 5.99596 6.37918 6.91803 7.47714 8.96556 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.055291 B = 0.014025 C = 0.011957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.294057 B = 1995.963050 C = 2341.129957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 H 0.062 0.938 4 C -0.060 4.060 5 S -0.302 6.302 6 C -0.063 4.063 7 C -0.099 4.099 8 C 0.044 3.956 9 H -0.002 1.002 10 C -0.520 4.520 11 H 0.061 0.939 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.945 3.055 15 H -0.279 1.279 16 H -0.288 1.288 17 H -0.266 1.266 18 H 0.064 0.936 19 H 0.053 0.947 20 H 0.041 0.959 21 H 0.117 0.883 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.080 2.442 6.519 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.208 4.208 5 S -0.076 6.076 6 C -0.211 4.211 7 C -0.139 4.139 8 C 0.025 3.975 9 H 0.016 0.984 10 C -0.558 4.558 11 H 0.079 0.921 12 C -0.185 4.185 13 N -0.558 5.558 14 Si 0.771 3.229 15 H -0.205 1.205 16 H -0.214 1.214 17 H -0.191 1.191 18 H 0.083 0.917 19 H 0.072 0.928 20 H 0.060 0.940 21 H 0.135 0.865 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.121 0.879 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.677 2.661 7.233 7.737 hybrid contribution -0.911 -0.389 -2.126 2.346 sum -0.234 2.272 5.107 5.594 Atomic orbital electron populations 1.21682 0.94207 1.01117 1.01327 1.21265 0.96782 0.98820 0.93234 0.91975 1.23528 0.91337 1.03781 1.02147 1.86183 1.10169 1.86725 1.24477 1.23400 1.03185 1.01365 0.93144 1.21582 0.97461 0.97576 0.97241 1.18623 0.91690 0.94587 0.92564 0.98373 1.21555 1.25600 1.15742 0.92906 0.92050 1.25684 0.95999 0.95051 1.01772 1.70075 1.42708 1.18562 1.24475 0.85741 0.78824 0.78359 0.79956 1.20486 1.21418 1.19084 0.91669 0.92835 0.93975 0.86452 0.90712 0.91439 0.87930 0.92578 0.93608 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.43 8.75 71.98 0.63 -3.80 15 2 C -0.08 -3.17 2.20 -10.90 -0.02 -3.19 15 3 H 0.06 2.47 8.05 -2.39 -0.02 2.45 15 4 C -0.06 -2.03 5.73 72.01 0.41 -1.61 15 5 S -0.30 -10.72 22.34 -56.49 -1.26 -11.98 15 6 C -0.06 -2.44 6.45 72.01 0.46 -1.98 15 7 C -0.10 -4.54 4.96 30.49 0.15 -4.39 15 8 C 0.04 2.10 1.39 -11.82 -0.02 2.09 15 9 H 0.00 -0.10 8.03 -2.39 -0.02 -0.12 15 10 C -0.52 -27.35 7.60 25.60 0.19 -27.15 15 11 H 0.06 3.16 6.15 -2.91 -0.02 3.14 15 12 C 0.01 0.73 5.09 84.65 0.43 1.16 15 13 N -0.92 -52.26 12.06 21.45 0.26 -52.00 15 14 Si 0.94 42.82 29.55 68.60 2.03 44.85 15 15 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 15 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 18 H 0.06 1.86 8.14 -2.39 -0.02 1.84 15 19 H 0.05 2.08 6.05 -2.39 -0.01 2.06 15 20 H 0.04 1.51 8.14 -2.39 -0.02 1.49 15 21 H 0.12 3.29 8.14 -2.39 -0.02 3.27 15 22 H 0.07 2.55 8.14 -2.38 -0.02 2.53 15 23 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 24 H 0.10 3.56 8.14 -2.39 -0.02 3.54 15 25 H 0.06 2.90 6.55 -2.39 -0.02 2.89 15 26 H 0.05 2.05 8.05 -2.38 -0.02 2.04 15 27 H 0.26 14.13 8.31 -92.71 -0.77 13.36 15 Total: -1.00 -56.22 227.49 4.39 -51.82 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.13 Total: 6.20 kcal Atomic # 6 Polarization: -41.13 SS G_CDS: 2.24 Total: -38.89 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: 0.26 Total: -52.00 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.26 Total: -11.98 kcal Total: -56.22 4.39 -51.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260933060.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.983 kcal (2) G-P(sol) polarization free energy of solvation -56.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds