Wall clock time and date at job start Mon Mar 30 2020 02:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.52220 * 2 1 4 4 C 1.53096 * 109.57253 * 239.84957 * 2 1 3 5 5 O 1.42930 * 109.41898 * 297.67216 * 4 2 1 6 6 C 1.42904 * 114.08305 * 298.84863 * 5 4 2 7 7 C 1.53093 * 109.42351 * 61.15476 * 6 5 4 8 8 C 1.53178 * 109.52524 * 120.13229 * 2 1 3 9 9 O 1.42900 * 109.54156 * 182.85377 * 8 2 1 10 10 C 1.50697 * 109.54073 * 303.11966 * 8 2 1 11 11 H 1.07995 * 120.00232 * 359.55625 * 10 8 2 12 12 C 1.37876 * 120.00021 * 179.55747 * 10 8 2 13 13 N 1.31515 * 119.99795 * 359.97438 * 12 10 8 14 14 Si 1.86802 * 120.00279 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47303 * 89.99559 * 14 12 10 16 16 H 1.48500 * 109.46995 * 209.99968 * 14 12 10 17 17 H 1.48505 * 109.46894 * 329.99559 * 14 12 10 18 18 H 1.09001 * 109.46796 * 299.86721 * 1 2 3 19 19 H 1.08997 * 109.47310 * 59.86610 * 1 2 3 20 20 H 1.09001 * 109.46774 * 179.86964 * 1 2 3 21 21 H 1.09003 * 109.48254 * 57.64859 * 4 2 1 22 22 H 1.08992 * 109.48305 * 177.67981 * 4 2 1 23 23 H 1.09002 * 109.48241 * 301.16394 * 6 5 4 24 24 H 1.08999 * 109.47648 * 181.13988 * 6 5 4 25 25 H 1.09000 * 109.52228 * 62.29092 * 7 6 5 26 26 H 1.08998 * 109.52401 * 182.47941 * 7 6 5 27 27 H 0.96702 * 113.99504 * 180.44023 * 9 8 2 28 28 H 0.97003 * 119.99829 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0429 -0.7245 -1.2473 5 8 1.6122 -2.0871 -1.2162 6 6 2.0996 -2.8272 -0.0952 7 6 1.5890 -2.1872 1.1984 8 6 2.0420 -0.7247 1.2486 9 8 3.4694 -0.6672 1.2831 10 6 1.4791 -0.0647 2.4809 11 1 0.8275 0.7912 2.3852 12 6 1.7961 -0.5535 3.7305 13 7 2.5892 -1.5960 3.8470 14 14 1.0978 0.2642 5.2580 15 1 -0.1973 -0.3707 5.6112 16 1 2.0514 0.1039 6.3851 17 1 0.8843 1.7096 4.9921 18 1 -0.3633 0.5118 0.8912 19 1 -0.3634 0.5159 -0.8887 20 1 -0.3633 -1.0277 -0.0023 21 1 1.6466 -0.2384 -2.1389 22 1 3.1320 -0.6878 -1.2670 23 1 3.1896 -2.8182 -0.0997 24 1 1.7444 -3.8559 -0.1566 25 1 0.5002 -2.2323 1.2220 26 1 1.9955 -2.7239 2.0555 27 1 3.8626 -1.1134 2.0456 28 1 2.8125 -1.9397 4.7263 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935209.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:43 Heat of formation + Delta-G solvation = -128.471920 kcal Electronic energy + Delta-G solvation = -12491.476199 eV Core-core repulsion = 10313.230226 eV Total energy + Delta-G solvation = -2178.245972 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.63323 -37.18053 -34.17066 -34.04526 -31.77874 -28.06338 -27.30801 -24.23784 -23.74208 -19.80118 -18.86406 -17.21831 -17.05889 -16.60592 -16.12118 -15.71627 -15.45442 -14.49339 -13.90418 -13.43114 -13.32073 -12.88030 -12.71609 -12.58666 -12.40671 -12.14705 -11.97224 -11.93725 -11.26763 -10.98916 -10.59339 -10.38370 -9.80540 -8.14818 -6.32472 1.38919 1.41686 1.50358 2.39081 3.04614 3.10290 3.93845 4.22377 4.28812 4.40255 4.47650 4.66441 4.74651 4.78985 4.94099 4.99829 5.12529 5.20213 5.40548 5.44194 5.59652 5.79473 5.97980 6.21916 6.40720 6.72128 7.37102 7.47982 8.85249 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.056679 B = 0.015713 C = 0.014261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.893321 B = 1781.564898 C = 1962.904073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 H 0.060 0.940 4 C 0.072 3.928 5 O -0.396 6.396 6 C 0.067 3.933 7 C -0.162 4.162 8 C 0.241 3.759 9 O -0.600 6.600 10 C -0.551 4.551 11 H 0.055 0.945 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.955 3.045 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.274 1.274 18 H 0.048 0.952 19 H 0.067 0.933 20 H 0.048 0.952 21 H 0.109 0.891 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.097 0.903 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.373 0.627 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.011 -0.035 -4.880 5.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 H 0.079 0.921 4 C -0.004 4.004 5 O -0.315 6.315 6 C -0.010 4.010 7 C -0.201 4.201 8 C 0.202 3.798 9 O -0.408 6.408 10 C -0.589 4.589 11 H 0.073 0.927 12 C -0.173 4.173 13 N -0.556 5.556 14 Si 0.781 3.219 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.199 1.199 18 H 0.067 0.933 19 H 0.086 0.914 20 H 0.067 0.933 21 H 0.127 0.873 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.115 0.885 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.223 0.777 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.146 0.110 -5.448 5.856 hybrid contribution 0.070 0.142 1.926 1.932 sum -2.076 0.251 -3.522 4.096 Atomic orbital electron populations 1.21590 0.93559 1.01531 1.01127 1.21632 0.97135 0.99089 0.95123 0.92115 1.22592 0.98034 0.81939 0.97852 1.87751 1.74723 1.23136 1.45888 1.22582 0.97490 0.95152 0.85759 1.22642 0.99851 0.99885 0.97714 1.18814 0.78089 0.90986 0.91919 1.86081 1.22994 1.81010 1.50763 1.22034 1.29767 1.14763 0.92337 0.92696 1.25666 0.94953 0.95066 1.01600 1.69686 1.36797 1.24324 1.24765 0.85610 0.78216 0.78875 0.79194 1.20189 1.20750 1.19926 0.93324 0.91428 0.93265 0.87316 0.94140 0.94261 0.88476 0.93457 0.90522 0.77747 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.62 8.50 71.98 0.61 -4.01 15 2 C -0.11 -4.71 2.48 -10.70 -0.03 -4.74 15 3 H 0.06 2.62 8.14 -2.39 -0.02 2.60 15 4 C 0.07 2.72 6.11 72.01 0.44 3.16 15 5 O -0.40 -15.67 10.19 -148.98 -1.52 -17.19 15 6 C 0.07 2.68 6.69 72.01 0.48 3.17 15 7 C -0.16 -7.60 4.49 30.68 0.14 -7.47 15 8 C 0.24 11.88 0.46 -11.42 -0.01 11.87 15 9 O -0.60 -31.17 11.93 -148.98 -1.78 -32.95 15 10 C -0.55 -29.44 7.52 25.60 0.19 -29.25 15 11 H 0.05 2.93 6.52 -2.91 -0.02 2.92 15 12 C 0.03 1.39 5.22 84.65 0.44 1.83 15 13 N -0.91 -48.71 9.75 21.45 0.21 -48.50 15 14 Si 0.95 42.37 29.54 68.60 2.03 44.40 15 15 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 18 H 0.05 1.96 6.45 -2.39 -0.02 1.94 15 19 H 0.07 2.12 8.14 -2.39 -0.02 2.10 15 20 H 0.05 1.93 6.15 -2.39 -0.01 1.92 15 21 H 0.11 3.34 8.14 -2.39 -0.02 3.32 15 22 H 0.04 1.58 7.82 -2.39 -0.02 1.56 15 23 H 0.04 1.62 7.82 -2.39 -0.02 1.60 15 24 H 0.10 3.39 8.14 -2.39 -0.02 3.37 15 25 H 0.05 2.23 6.63 -2.39 -0.02 2.22 15 26 H 0.08 3.91 6.18 -2.39 -0.01 3.90 15 27 H 0.37 19.98 7.18 -74.06 -0.53 19.45 15 28 H 0.27 13.60 8.31 -92.71 -0.77 12.83 15 Total: -1.00 -56.04 219.80 1.84 -54.20 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.62 Total: 25.45 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 2.27 Total: -25.42 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.21 Total: -48.50 kcal Atomic # 8 Polarization: -46.84 SS G_CDS: -3.30 Total: -50.14 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -56.04 1.84 -54.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935209.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.267 kcal (2) G-P(sol) polarization free energy of solvation -56.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds