Wall clock time and date at job start Mon Mar 30 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.56960 * 2 1 4 4 C 1.53104 * 109.59719 * 120.12317 * 2 1 3 5 5 O 1.42908 * 109.48438 * 177.42135 * 4 2 1 6 6 C 1.42903 * 114.10041 * 298.88936 * 5 4 2 7 7 C 1.53100 * 109.41443 * 61.15505 * 6 5 4 8 8 C 1.53179 * 109.51835 * 239.84737 * 2 1 3 9 9 O 1.42897 * 109.54420 * 303.06761 * 8 2 1 10 10 C 1.50694 * 109.54549 * 63.24589 * 8 2 1 11 11 H 1.07997 * 120.00374 * 359.87489 * 10 8 2 12 12 C 1.37882 * 120.00084 * 179.86363 * 10 8 2 13 13 N 1.31517 * 119.99888 * 5.78445 * 12 10 8 14 14 Si 1.86804 * 120.00091 * 185.77418 * 12 10 8 15 15 H 1.48497 * 109.46965 * 94.99037 * 14 12 10 16 16 H 1.48500 * 109.46924 * 214.98753 * 14 12 10 17 17 H 1.48501 * 109.47040 * 334.98517 * 14 12 10 18 18 H 1.08999 * 109.46823 * 180.15665 * 1 2 3 19 19 H 1.08996 * 109.46801 * 300.15297 * 1 2 3 20 20 H 1.08995 * 109.46870 * 60.15338 * 1 2 3 21 21 H 1.08999 * 109.40687 * 57.44477 * 4 2 1 22 22 H 1.08996 * 109.49087 * 297.45411 * 4 2 1 23 23 H 1.08999 * 109.47846 * 301.18002 * 6 5 4 24 24 H 1.08993 * 109.48167 * 181.14184 * 6 5 4 25 25 H 1.09005 * 109.52040 * 182.48918 * 7 6 5 26 26 H 1.09001 * 109.57268 * 62.32930 * 7 6 5 27 27 H 0.96705 * 113.99723 * 180.18279 * 9 8 2 28 28 H 0.96997 * 120.00222 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7239 1.2476 5 8 3.4714 -0.7751 1.2151 6 6 4.0045 -1.4835 0.0944 7 6 3.5715 -0.7889 -1.1995 8 6 2.0418 -0.7252 -1.2484 9 8 1.5090 -2.0507 -1.2834 10 6 1.6077 0.0253 -2.4809 11 1 1.0232 0.9284 -2.3854 12 6 1.9570 -0.4408 -3.7307 13 7 2.5697 -1.5980 -3.8533 14 14 1.5596 0.5712 -5.2497 15 1 2.7385 1.3960 -5.6173 16 1 1.2207 -0.3369 -6.3748 17 1 0.4038 1.4589 -4.9646 18 1 -0.3633 -1.0277 0.0028 19 1 -0.3633 0.5162 0.8886 20 1 -0.3633 0.5114 -0.8913 21 1 1.6439 -1.7377 1.2683 22 1 1.7193 -0.1869 2.1389 23 1 3.6304 -2.5072 0.1000 24 1 5.0927 -1.4936 0.1549 25 1 3.9402 -1.3527 -2.0565 26 1 3.9792 0.2216 -1.2255 27 1 1.7947 -2.5693 -2.0480 28 1 2.8151 -1.9262 -4.7325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260935210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:45 Heat of formation + Delta-G solvation = -112.135278 kcal Electronic energy + Delta-G solvation = -12435.889819 eV Core-core repulsion = 10258.352256 eV Total energy + Delta-G solvation = -2177.537562 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.75181 -35.38359 -32.41499 -31.99944 -30.06791 -26.24016 -25.66372 -22.47164 -21.25682 -18.68150 -17.01925 -15.32237 -15.10070 -15.00980 -14.18095 -13.71952 -13.24967 -12.68282 -12.42733 -11.82116 -11.39930 -11.14386 -11.05054 -10.92081 -10.66976 -10.25243 -10.03760 -9.90902 -9.71009 -9.21279 -8.63491 -8.52489 -7.89164 -6.17869 -4.25817 3.22072 3.29928 3.33449 4.31604 4.69539 5.07534 5.74988 5.84073 5.98840 6.13667 6.18098 6.33355 6.39339 6.40229 6.50321 6.62746 6.84438 7.02248 7.15023 7.19146 7.56598 7.64189 7.88631 8.06821 8.19268 8.75585 9.41057 9.60918 10.86466 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052256 B = 0.015932 C = 0.014022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.699397 B = 1757.094976 C = 1996.380664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 H 0.068 0.932 4 C 0.070 3.930 5 O -0.399 6.399 6 C 0.063 3.937 7 C -0.170 4.170 8 C 0.257 3.743 9 O -0.591 6.591 10 C -0.529 4.529 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.901 5.901 14 Si 0.898 3.102 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 H 0.056 0.944 19 H 0.030 0.970 20 H 0.061 0.939 21 H 0.049 0.951 22 H 0.073 0.927 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.051 0.949 27 H 0.381 0.619 28 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.021 0.707 4.280 4.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.125 4.125 3 H 0.087 0.913 4 C -0.006 4.006 5 O -0.318 6.318 6 C -0.014 4.014 7 C -0.208 4.208 8 C 0.217 3.783 9 O -0.401 6.401 10 C -0.567 4.567 11 H 0.079 0.921 12 C -0.133 4.133 13 N -0.542 5.542 14 Si 0.726 3.274 15 H -0.207 1.207 16 H -0.211 1.211 17 H -0.198 1.198 18 H 0.075 0.925 19 H 0.049 0.951 20 H 0.080 0.920 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.090 0.910 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.232 0.768 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.120 0.870 4.837 4.916 hybrid contribution 0.024 0.280 -1.749 1.772 sum -0.097 1.150 3.087 3.296 Atomic orbital electron populations 1.21526 0.95230 1.01685 0.99954 1.21680 0.96208 0.99132 0.95447 0.91320 1.22553 0.80840 0.99795 0.97461 1.87742 1.20746 1.76951 1.46406 1.22603 0.96833 0.95071 0.86868 1.22776 1.00719 1.00388 0.96935 1.18549 0.87604 0.81187 0.90962 1.86064 1.75531 1.27339 1.51192 1.21762 1.33681 1.10201 0.91028 0.92096 1.24999 0.94182 0.94916 0.99182 1.69530 1.41720 1.18674 1.24284 0.86488 0.78682 0.80052 0.82226 1.20654 1.21145 1.19820 0.92502 0.95119 0.92041 0.93235 0.90862 0.93656 0.91007 0.88840 0.93012 0.76759 0.92344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 8.82 37.16 0.33 -2.22 15 2 C -0.11 -2.32 2.21 -90.47 -0.20 -2.52 15 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 4 C 0.07 1.41 5.98 37.21 0.22 1.63 15 5 O -0.40 -8.49 10.77 -35.23 -0.38 -8.87 15 6 C 0.06 1.31 6.70 37.21 0.25 1.56 15 7 C -0.17 -4.02 4.86 -26.59 -0.13 -4.15 15 8 C 0.26 6.33 0.35 -91.59 -0.03 6.30 15 9 O -0.59 -15.08 11.15 -35.23 -0.39 -15.47 15 10 C -0.53 -14.10 7.54 -34.44 -0.26 -14.36 15 11 H 0.06 1.63 6.95 -52.49 -0.36 1.26 15 12 C 0.07 1.80 5.21 -17.82 -0.09 1.70 15 13 N -0.90 -23.90 9.80 55.43 0.54 -23.36 15 14 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 15 15 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 18 H 0.06 1.18 7.61 -51.93 -0.40 0.78 15 19 H 0.03 0.51 8.14 -51.93 -0.42 0.09 15 20 H 0.06 1.30 6.84 -51.93 -0.36 0.94 15 21 H 0.05 1.01 7.82 -51.93 -0.41 0.61 15 22 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 23 H 0.05 0.95 7.82 -51.93 -0.41 0.55 15 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 15 25 H 0.09 2.36 6.42 -51.93 -0.33 2.03 15 26 H 0.05 1.24 8.14 -51.93 -0.42 0.81 15 27 H 0.38 10.04 6.95 45.56 0.32 10.36 15 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 LS Contribution 223.67 15.07 3.37 3.37 Total: -1.00 -27.09 223.67 -4.99 -32.08 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -3.19 Total: 8.59 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 7 Polarization: -23.90 SS G_CDS: 0.54 Total: -23.36 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.77 Total: -24.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -27.09 -4.99 -32.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.060 kcal (2) G-P(sol) polarization free energy of solvation -27.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds