Wall clock time and date at job start Mon Mar 30 2020 02:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.56960 * 2 1 4 4 C 1.53104 * 109.59719 * 120.12317 * 2 1 3 5 5 O 1.42908 * 109.48438 * 177.42135 * 4 2 1 6 6 C 1.42903 * 114.10041 * 298.88936 * 5 4 2 7 7 C 1.53100 * 109.41443 * 61.15505 * 6 5 4 8 8 C 1.53179 * 109.51835 * 239.84737 * 2 1 3 9 9 O 1.42897 * 109.54420 * 303.06761 * 8 2 1 10 10 C 1.50694 * 109.54549 * 63.24589 * 8 2 1 11 11 H 1.07997 * 120.00374 * 359.87489 * 10 8 2 12 12 C 1.37882 * 120.00084 * 179.86363 * 10 8 2 13 13 N 1.31517 * 119.99888 * 5.78445 * 12 10 8 14 14 Si 1.86804 * 120.00091 * 185.77418 * 12 10 8 15 15 H 1.48497 * 109.46965 * 94.99037 * 14 12 10 16 16 H 1.48500 * 109.46924 * 214.98753 * 14 12 10 17 17 H 1.48501 * 109.47040 * 334.98517 * 14 12 10 18 18 H 1.08999 * 109.46823 * 180.15665 * 1 2 3 19 19 H 1.08996 * 109.46801 * 300.15297 * 1 2 3 20 20 H 1.08995 * 109.46870 * 60.15338 * 1 2 3 21 21 H 1.08999 * 109.40687 * 57.44477 * 4 2 1 22 22 H 1.08996 * 109.49087 * 297.45411 * 4 2 1 23 23 H 1.08999 * 109.47846 * 301.18002 * 6 5 4 24 24 H 1.08993 * 109.48167 * 181.14184 * 6 5 4 25 25 H 1.09005 * 109.52040 * 182.48918 * 7 6 5 26 26 H 1.09001 * 109.57268 * 62.32930 * 7 6 5 27 27 H 0.96705 * 113.99723 * 180.18279 * 9 8 2 28 28 H 0.96997 * 120.00222 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0436 -0.7239 1.2476 5 8 3.4714 -0.7751 1.2151 6 6 4.0045 -1.4835 0.0944 7 6 3.5715 -0.7889 -1.1995 8 6 2.0418 -0.7252 -1.2484 9 8 1.5090 -2.0507 -1.2834 10 6 1.6077 0.0253 -2.4809 11 1 1.0232 0.9284 -2.3854 12 6 1.9570 -0.4408 -3.7307 13 7 2.5697 -1.5980 -3.8533 14 14 1.5596 0.5712 -5.2497 15 1 2.7385 1.3960 -5.6173 16 1 1.2207 -0.3369 -6.3748 17 1 0.4038 1.4589 -4.9646 18 1 -0.3633 -1.0277 0.0028 19 1 -0.3633 0.5162 0.8886 20 1 -0.3633 0.5114 -0.8913 21 1 1.6439 -1.7377 1.2683 22 1 1.7193 -0.1869 2.1389 23 1 3.6304 -2.5072 0.1000 24 1 5.0927 -1.4936 0.1549 25 1 3.9402 -1.3527 -2.0565 26 1 3.9792 0.2216 -1.2255 27 1 1.7947 -2.5693 -2.0480 28 1 2.8151 -1.9262 -4.7325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935210.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:45 Heat of formation + Delta-G solvation = -130.940875 kcal Electronic energy + Delta-G solvation = -12436.705291 eV Core-core repulsion = 10258.352256 eV Total energy + Delta-G solvation = -2178.353034 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.50954 -37.21969 -34.23342 -33.95135 -31.90495 -28.15598 -27.33362 -24.29839 -23.00682 -20.49599 -19.00034 -17.15962 -16.85092 -16.81093 -15.99396 -15.49647 -15.08321 -14.45432 -14.23458 -13.59736 -13.27491 -12.88107 -12.84973 -12.61517 -12.50351 -12.15771 -11.86633 -11.75123 -11.48580 -10.95352 -10.54370 -10.41676 -9.81290 -8.17405 -6.32606 1.38264 1.41378 1.50154 2.38795 3.04400 3.08607 4.02095 4.17329 4.27873 4.35855 4.49827 4.62908 4.73146 4.77548 4.84004 4.94789 5.10474 5.25717 5.38144 5.49058 5.60131 5.75873 5.96489 6.20912 6.37517 6.71471 7.36771 7.54897 8.84503 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052256 B = 0.015932 C = 0.014022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.699397 B = 1757.094976 C = 1996.380664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 H 0.065 0.935 4 C 0.072 3.928 5 O -0.402 6.402 6 C 0.069 3.931 7 C -0.165 4.165 8 C 0.244 3.756 9 O -0.594 6.594 10 C -0.551 4.551 11 H 0.052 0.948 12 C 0.028 3.972 13 N -0.914 5.914 14 Si 0.954 3.046 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.274 1.274 18 H 0.045 0.955 19 H 0.067 0.933 20 H 0.043 0.957 21 H 0.044 0.956 22 H 0.108 0.892 23 H 0.042 0.958 24 H 0.098 0.902 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.374 0.626 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 1.168 4.925 5.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.004 4.004 5 O -0.321 6.321 6 C -0.008 4.008 7 C -0.204 4.204 8 C 0.204 3.796 9 O -0.403 6.403 10 C -0.589 4.589 11 H 0.070 0.930 12 C -0.172 4.172 13 N -0.555 5.555 14 Si 0.780 3.220 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.198 1.198 18 H 0.065 0.935 19 H 0.085 0.915 20 H 0.063 0.937 21 H 0.063 0.937 22 H 0.126 0.874 23 H 0.061 0.939 24 H 0.116 0.884 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.224 0.776 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.217 1.332 5.494 5.657 hybrid contribution 0.045 0.136 -1.950 1.955 sum -0.172 1.469 3.543 3.839 Atomic orbital electron populations 1.21440 0.94000 1.01268 1.00926 1.21704 0.97372 0.98667 0.95086 0.91690 1.22651 0.80193 0.99751 0.97854 1.87746 1.21440 1.76885 1.46066 1.22566 0.98392 0.94368 0.85459 1.22652 1.00173 0.99749 0.97814 1.18762 0.88297 0.80689 0.91830 1.86059 1.75739 1.27789 1.50681 1.22010 1.34151 1.10362 0.92410 0.92954 1.25646 0.94165 0.95848 1.01505 1.69610 1.41796 1.19313 1.24821 0.85610 0.78383 0.78741 0.79244 1.20308 1.20753 1.19827 0.93548 0.91451 0.93740 0.93737 0.87373 0.93928 0.88389 0.90846 0.93978 0.77596 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 8.82 71.98 0.63 -3.96 15 2 C -0.11 -4.64 2.21 -10.70 -0.02 -4.66 15 3 H 0.06 2.78 8.14 -2.39 -0.02 2.76 15 4 C 0.07 2.70 5.98 72.02 0.43 3.13 15 5 O -0.40 -16.15 10.77 -148.98 -1.60 -17.75 15 6 C 0.07 2.76 6.70 72.02 0.48 3.25 15 7 C -0.17 -7.78 4.86 30.69 0.15 -7.63 15 8 C 0.24 11.95 0.35 -11.42 0.00 11.95 15 9 O -0.59 -30.30 11.15 -148.98 -1.66 -31.96 15 10 C -0.55 -29.48 7.54 25.60 0.19 -29.29 15 11 H 0.05 2.81 6.95 -2.91 -0.02 2.79 15 12 C 0.03 1.46 5.21 84.66 0.44 1.90 15 13 N -0.91 -48.62 9.80 21.45 0.21 -48.41 15 14 Si 0.95 42.39 29.54 68.60 2.03 44.42 15 15 H -0.28 -12.11 7.11 99.48 0.71 -11.40 15 16 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 18 H 0.05 1.86 7.61 -2.39 -0.02 1.84 15 19 H 0.07 2.07 8.14 -2.39 -0.02 2.05 15 20 H 0.04 1.84 6.84 -2.39 -0.02 1.82 15 21 H 0.04 1.73 7.82 -2.39 -0.02 1.71 15 22 H 0.11 3.32 8.14 -2.39 -0.02 3.31 15 23 H 0.04 1.74 7.82 -2.39 -0.02 1.72 15 24 H 0.10 3.42 8.14 -2.39 -0.02 3.40 15 25 H 0.07 3.73 6.42 -2.38 -0.02 3.71 15 26 H 0.04 2.00 8.14 -2.39 -0.02 1.98 15 27 H 0.37 19.95 6.95 -74.05 -0.51 19.43 15 28 H 0.27 13.62 8.31 -92.71 -0.77 12.85 15 Total: -1.00 -55.87 223.67 1.91 -53.97 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.63 Total: 25.05 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 2.30 Total: -25.31 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: 0.21 Total: -48.41 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -3.26 Total: -49.71 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -55.87 1.91 -53.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935210.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.975 kcal (2) G-P(sol) polarization free energy of solvation -55.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds