Wall clock time and date at job start Mon Mar 30 2020 02:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.52382 * 2 1 4 4 C 1.53097 * 109.52035 * 239.87605 * 2 1 3 5 5 O 1.42898 * 109.41405 * 182.42163 * 4 2 1 6 6 C 1.42899 * 114.10053 * 61.16391 * 5 4 2 7 7 C 1.53098 * 109.40993 * 298.83671 * 6 5 4 8 8 C 1.53177 * 109.21356 * 57.57693 * 7 6 5 9 9 O 1.42907 * 109.54386 * 62.91984 * 8 7 6 10 10 C 1.50703 * 109.54474 * 183.18353 * 8 7 6 11 11 H 1.07994 * 120.00197 * 120.00002 * 10 8 7 12 12 C 1.37883 * 119.99782 * 299.99992 * 10 8 7 13 13 N 1.31507 * 120.00044 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99833 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.46830 * 90.00332 * 14 12 10 16 16 H 1.48506 * 109.47140 * 210.00354 * 14 12 10 17 17 H 1.48499 * 109.47383 * 330.00290 * 14 12 10 18 18 H 1.08998 * 109.47140 * 180.13022 * 1 2 3 19 19 H 1.09000 * 109.46340 * 300.12221 * 1 2 3 20 20 H 1.09000 * 109.47283 * 60.11994 * 1 2 3 21 21 H 1.09007 * 109.47760 * 62.43490 * 4 2 1 22 22 H 1.09003 * 109.48798 * 302.41155 * 4 2 1 23 23 H 1.08999 * 109.48409 * 178.86351 * 6 5 4 24 24 H 1.08998 * 109.49466 * 58.82352 * 6 5 4 25 25 H 1.09002 * 109.52244 * 177.51632 * 7 6 5 26 26 H 1.09004 * 109.52508 * 297.64161 * 7 6 5 27 27 H 0.96699 * 113.99570 * 59.99241 * 9 8 7 28 28 H 0.96999 * 120.00541 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0416 -0.7242 -1.2481 5 8 3.4694 -0.7723 -1.2176 6 6 4.0056 -1.4795 -0.0975 7 6 3.5730 -0.7856 1.1968 8 6 2.0434 -0.7237 1.2486 9 8 1.5122 -2.0500 1.2834 10 6 1.6107 0.0270 2.4817 11 1 1.0217 0.9272 2.3869 12 6 1.9668 -0.4356 3.7308 13 7 2.6845 -1.5315 3.8462 14 14 1.4310 0.4953 5.2592 15 1 0.1155 -0.0198 5.7167 16 1 2.4383 0.3044 6.3336 17 1 1.3134 1.9413 4.9423 18 1 -0.3633 -1.0276 0.0023 19 1 -0.3632 0.5158 0.8889 20 1 -0.3634 0.5120 -0.8910 21 1 1.7148 -0.1879 -2.1391 22 1 1.6440 -1.7389 -1.2683 23 1 5.0938 -1.4872 -0.1595 24 1 3.6339 -2.5041 -0.1024 25 1 3.9441 -1.3484 2.0534 26 1 3.9795 0.2255 1.2215 27 1 1.8022 -2.5699 2.0454 28 1 2.9354 -1.8568 4.7249 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935213.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:46 Heat of formation + Delta-G solvation = -130.726853 kcal Electronic energy + Delta-G solvation = -12436.608463 eV Core-core repulsion = 10258.264709 eV Total energy + Delta-G solvation = -2178.343754 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.50956 -37.22487 -34.24023 -33.97864 -31.87671 -28.15251 -27.33121 -24.30453 -22.98994 -20.50367 -18.99217 -17.15966 -16.85723 -16.80229 -15.98940 -15.49864 -15.07739 -14.44948 -14.24161 -13.62759 -13.29127 -12.87152 -12.84733 -12.61305 -12.46393 -12.15285 -11.85865 -11.74734 -11.46820 -10.94495 -10.57418 -10.42032 -9.81255 -8.14986 -6.32684 1.38817 1.41501 1.49948 2.38940 3.04925 3.09465 4.01173 4.17366 4.28456 4.36777 4.50112 4.64413 4.72786 4.77564 4.84152 4.95551 5.11997 5.27077 5.38799 5.48789 5.61089 5.77931 5.98136 6.21131 6.38731 6.71631 7.37358 7.49521 8.84955 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.052622 B = 0.015975 C = 0.013932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.965559 B = 1752.356016 C = 2009.290827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 H 0.064 0.936 4 C 0.072 3.928 5 O -0.403 6.403 6 C 0.068 3.932 7 C -0.167 4.167 8 C 0.244 3.756 9 O -0.592 6.592 10 C -0.551 4.551 11 H 0.052 0.948 12 C 0.028 3.972 13 N -0.914 5.914 14 Si 0.954 3.046 15 H -0.278 1.278 16 H -0.281 1.281 17 H -0.274 1.274 18 H 0.046 0.954 19 H 0.044 0.956 20 H 0.067 0.933 21 H 0.108 0.892 22 H 0.045 0.955 23 H 0.097 0.903 24 H 0.042 0.958 25 H 0.080 0.920 26 H 0.038 0.962 27 H 0.372 0.628 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 0.926 -4.873 4.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.128 4.128 3 H 0.082 0.918 4 C -0.004 4.004 5 O -0.322 6.322 6 C -0.008 4.008 7 C -0.205 4.205 8 C 0.205 3.795 9 O -0.400 6.400 10 C -0.589 4.589 11 H 0.070 0.930 12 C -0.172 4.172 13 N -0.555 5.555 14 Si 0.780 3.220 15 H -0.204 1.204 16 H -0.207 1.207 17 H -0.199 1.199 18 H 0.065 0.935 19 H 0.063 0.937 20 H 0.085 0.915 21 H 0.126 0.874 22 H 0.063 0.937 23 H 0.115 0.885 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.057 0.943 27 H 0.221 0.779 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.550 1.104 -5.442 5.580 hybrid contribution -0.019 0.115 1.941 1.945 sum -0.570 1.219 -3.501 3.751 Atomic orbital electron populations 1.21449 0.93971 1.01306 1.00961 1.21704 0.97398 0.98634 0.95106 0.91788 1.22651 0.80204 0.99746 0.97832 1.87741 1.21399 1.76933 1.46158 1.22579 0.98315 0.94398 0.85532 1.22685 1.00109 0.99754 0.97988 1.18750 0.88400 0.80562 0.91799 1.86078 1.75511 1.27711 1.50669 1.21996 1.33759 1.10735 0.92423 0.92988 1.25644 0.94157 0.95825 1.01549 1.69672 1.38072 1.22922 1.24805 0.85623 0.78005 0.79041 0.79302 1.20372 1.20678 1.19852 0.93494 0.93683 0.91456 0.87415 0.93690 0.88491 0.93917 0.90155 0.94271 0.77911 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 8.82 71.98 0.63 -3.96 15 2 C -0.11 -4.64 2.20 -10.70 -0.02 -4.67 15 3 H 0.06 2.75 8.14 -2.39 -0.02 2.73 15 4 C 0.07 2.71 5.98 72.01 0.43 3.14 15 5 O -0.40 -16.26 10.76 -148.98 -1.60 -17.87 15 6 C 0.07 2.76 6.70 72.01 0.48 3.24 15 7 C -0.17 -7.89 4.84 30.69 0.15 -7.74 15 8 C 0.24 11.97 0.35 -11.42 0.00 11.97 15 9 O -0.59 -29.94 11.15 -148.98 -1.66 -31.60 15 10 C -0.55 -29.44 7.56 25.60 0.19 -29.25 15 11 H 0.05 2.79 6.94 -2.91 -0.02 2.77 15 12 C 0.03 1.45 5.22 84.66 0.44 1.90 15 13 N -0.91 -48.48 9.75 21.45 0.21 -48.27 15 14 Si 0.95 42.38 29.54 68.60 2.03 44.40 15 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 16 H -0.28 -12.21 7.11 99.48 0.71 -11.51 15 17 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 18 H 0.05 1.87 7.61 -2.39 -0.02 1.85 15 19 H 0.04 1.84 6.85 -2.39 -0.02 1.83 15 20 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 21 H 0.11 3.32 8.14 -2.38 -0.02 3.30 15 22 H 0.04 1.74 7.82 -2.39 -0.02 1.72 15 23 H 0.10 3.41 8.14 -2.39 -0.02 3.39 15 24 H 0.04 1.75 7.82 -2.39 -0.02 1.73 15 25 H 0.08 4.11 6.18 -2.39 -0.01 4.09 15 26 H 0.04 1.89 8.14 -2.38 -0.02 1.87 15 27 H 0.37 19.59 7.18 -74.06 -0.53 19.06 15 28 H 0.27 13.57 8.31 -92.71 -0.77 12.80 15 Total: -1.00 -55.75 223.62 1.89 -53.86 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.61 Total: 24.85 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 2.30 Total: -25.37 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.21 Total: -48.27 kcal Atomic # 8 Polarization: -46.20 SS G_CDS: -3.26 Total: -49.47 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Total: -55.75 1.89 -53.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935213.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.868 kcal (2) G-P(sol) polarization free energy of solvation -55.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds