Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.57341 * 2 1 4 4 C 1.53106 * 109.45465 * 120.21383 * 2 1 3 5 5 O 1.42900 * 109.48753 * 62.38024 * 4 2 1 6 6 C 1.42900 * 114.09625 * 61.11603 * 5 4 2 7 7 C 1.53086 * 109.41615 * 298.83752 * 6 5 4 8 8 C 1.53175 * 109.16196 * 57.60851 * 7 6 5 9 9 O 1.42900 * 109.54270 * 62.97947 * 8 7 6 10 10 C 1.50706 * 109.54284 * 183.15421 * 8 7 6 11 11 H 1.07993 * 119.99971 * 118.92704 * 10 8 7 12 12 C 1.37881 * 119.99822 * 298.92260 * 10 8 7 13 13 N 1.31513 * 119.99923 * 156.15323 * 12 10 8 14 14 Si 1.86796 * 120.00181 * 336.15741 * 12 10 8 15 15 H 1.48504 * 109.47138 * 179.97438 * 14 12 10 16 16 H 1.48500 * 109.47315 * 59.99741 * 14 12 10 17 17 H 1.48499 * 109.46961 * 299.99510 * 14 12 10 18 18 H 1.09002 * 109.47263 * 180.16015 * 1 2 3 19 19 H 1.09004 * 109.46651 * 300.15290 * 1 2 3 20 20 H 1.08998 * 109.47499 * 60.15479 * 1 2 3 21 21 H 1.08999 * 109.48017 * 302.35279 * 4 2 1 22 22 H 1.08994 * 109.41532 * 182.37377 * 4 2 1 23 23 H 1.09002 * 109.47869 * 178.85678 * 6 5 4 24 24 H 1.09003 * 109.49049 * 58.82870 * 6 5 4 25 25 H 1.09005 * 109.52465 * 297.70686 * 7 6 5 26 26 H 1.08998 * 109.57787 * 177.55331 * 7 6 5 27 27 H 0.96705 * 114.00136 * 52.92883 * 9 8 7 28 28 H 0.97001 * 119.99751 * 354.89797 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0269 0.0000 4 6 2.0399 -0.7265 1.2475 5 8 1.6098 -2.0888 1.2150 6 6 2.0988 -2.8284 0.0943 7 6 1.5894 -2.1879 -1.1994 8 6 2.0418 -0.7253 -1.2483 9 8 3.4692 -0.6673 -1.2834 10 6 1.4800 -0.0648 -2.4810 11 1 0.8141 0.7800 -2.3850 12 6 1.8163 -0.5391 -3.7312 13 7 1.0208 -0.3170 -4.7546 14 14 3.4018 -1.4971 -3.9714 15 1 3.5298 -1.8930 -5.3970 16 1 3.3787 -2.7139 -3.1204 17 1 4.5570 -0.6465 -3.5878 18 1 -0.3634 -1.0277 0.0029 19 1 -0.3633 0.5162 0.8887 20 1 -0.3634 0.5114 -0.8913 21 1 1.6425 -0.2410 2.1388 22 1 3.1290 -0.6895 1.2686 23 1 1.7437 -3.8572 0.1549 24 1 3.1887 -2.8191 0.1000 25 1 0.5006 -2.2334 -1.2244 26 1 1.9961 -2.7239 -2.0570 27 1 3.8675 -1.2017 -1.9841 28 1 0.1632 0.1151 -4.6174 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260935214.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = -116.800865 kcal Electronic energy + Delta-G solvation = -12573.506595 eV Core-core repulsion = 10395.766718 eV Total energy + Delta-G solvation = -2177.739877 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.94115 -37.55132 -34.77209 -34.16242 -32.16867 -28.01344 -27.39488 -24.18255 -23.87917 -20.23978 -19.63015 -17.79992 -17.38295 -16.77535 -16.31130 -15.89886 -15.38882 -14.52911 -14.44111 -13.80173 -13.60146 -13.12347 -12.89851 -12.64635 -12.25013 -12.17939 -12.02968 -11.64895 -11.30850 -11.06288 -10.64865 -10.57503 -10.02998 -8.77961 -6.47012 1.24855 1.40911 1.61352 2.35802 2.84921 3.00565 3.55447 4.00618 4.07115 4.17595 4.30980 4.40567 4.56237 4.68881 4.74195 4.84218 4.88055 4.95384 5.19588 5.27713 5.37485 5.50065 5.90641 5.96744 6.28850 6.47474 6.82869 7.29419 8.50310 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.049249 B = 0.019134 C = 0.016476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.405058 B = 1463.028377 C = 1698.995695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.104 4.104 3 H 0.062 0.938 4 C 0.071 3.929 5 O -0.391 6.391 6 C 0.063 3.937 7 C -0.183 4.183 8 C 0.218 3.782 9 O -0.583 6.583 10 C -0.627 4.627 11 H 0.031 0.969 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 1.063 2.937 15 H -0.293 1.293 16 H -0.233 1.233 17 H -0.261 1.261 18 H 0.053 0.947 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.112 0.888 22 H 0.052 0.948 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.348 0.652 28 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -4.692 9.397 11.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.123 4.123 3 H 0.080 0.920 4 C -0.005 4.005 5 O -0.310 6.310 6 C -0.014 4.014 7 C -0.221 4.221 8 C 0.179 3.821 9 O -0.395 6.395 10 C -0.664 4.664 11 H 0.049 0.951 12 C -0.212 4.212 13 N -0.553 5.553 14 Si 0.887 3.113 15 H -0.220 1.220 16 H -0.158 1.158 17 H -0.187 1.187 18 H 0.072 0.928 19 H 0.088 0.912 20 H 0.053 0.947 21 H 0.129 0.871 22 H 0.070 0.930 23 H 0.128 0.872 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.200 0.800 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.976 -5.084 8.904 10.997 hybrid contribution -1.173 1.072 -0.234 1.606 sum 2.803 -4.013 8.670 9.956 Atomic orbital electron populations 1.21588 0.93908 1.01632 1.00654 1.21540 0.96834 0.99258 0.94668 0.92001 1.22640 0.98690 0.81825 0.97372 1.87790 1.74701 1.22963 1.45497 1.22659 0.98326 0.95651 0.84717 1.23110 1.02070 0.98279 0.98668 1.19261 0.77248 0.91837 0.93759 1.86525 1.23251 1.73062 1.56627 1.22582 1.32347 1.18011 0.93487 0.95062 1.27104 1.04434 0.97267 0.92407 1.70942 1.09899 1.39737 1.34762 0.84105 0.73440 0.77168 0.76574 1.22009 1.15843 1.18688 0.92819 0.91157 0.94741 0.87056 0.92955 0.87165 0.92762 0.91784 0.91651 0.80047 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.70 8.49 71.98 0.61 -4.08 15 2 C -0.10 -4.28 2.49 -10.70 -0.03 -4.31 15 3 H 0.06 2.64 8.14 -2.39 -0.02 2.62 15 4 C 0.07 2.43 6.10 72.02 0.44 2.87 15 5 O -0.39 -13.74 10.19 -148.98 -1.52 -15.26 15 6 C 0.06 2.15 6.69 72.01 0.48 2.64 15 7 C -0.18 -7.66 4.40 30.68 0.14 -7.53 15 8 C 0.22 10.19 0.45 -11.42 -0.01 10.18 15 9 O -0.58 -26.85 11.54 -148.98 -1.72 -28.57 15 10 C -0.63 -35.21 7.92 25.60 0.20 -35.01 15 11 H 0.03 1.93 6.73 -2.91 -0.02 1.91 15 12 C -0.01 -0.64 5.24 84.66 0.44 -0.20 15 13 N -0.92 -56.34 13.70 21.45 0.29 -56.04 15 14 Si 1.06 47.47 23.82 68.60 1.63 49.11 15 15 H -0.29 -13.31 7.11 99.48 0.71 -12.60 15 16 H -0.23 -8.82 5.54 99.48 0.55 -8.27 15 17 H -0.26 -10.95 6.86 99.48 0.68 -10.27 15 18 H 0.05 2.09 6.15 -2.39 -0.01 2.07 15 19 H 0.07 2.24 8.14 -2.38 -0.02 2.22 15 20 H 0.03 1.51 6.43 -2.39 -0.02 1.49 15 21 H 0.11 3.10 8.14 -2.39 -0.02 3.08 15 22 H 0.05 1.78 7.82 -2.39 -0.02 1.76 15 23 H 0.11 3.11 8.14 -2.39 -0.02 3.09 15 24 H 0.05 1.78 7.82 -2.39 -0.02 1.76 15 25 H 0.06 2.80 6.64 -2.38 -0.02 2.78 15 26 H 0.07 2.74 4.79 -2.39 -0.01 2.73 15 27 H 0.35 14.92 3.48 -74.05 -0.26 14.66 15 28 H 0.26 15.99 8.73 -92.71 -0.81 15.18 15 Total: -1.00 -63.65 211.68 1.66 -62.00 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.68 Total: 24.21 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 2.28 Total: -35.44 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.29 Total: -56.04 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -3.24 Total: -43.83 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.63 Total: 49.11 kcal Total: -63.65 1.66 -62.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260935214.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.805 kcal (2) G-P(sol) polarization free energy of solvation -63.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds