Wall clock time and date at job start Mon Mar 30 2020 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 F 1.39898 * 109.47270 * 59.99891 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.53004 * 109.47053 * 300.00128 * 12 9 7 14 14 C 1.52996 * 109.47169 * 179.97438 * 13 12 9 15 15 C 1.53005 * 109.46949 * 60.00048 * 14 13 12 16 16 C 1.52998 * 109.47019 * 299.99672 * 15 14 13 17 17 C 1.52992 * 109.47319 * 180.02562 * 12 9 7 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46846 * 59.99549 * 12 9 7 20 20 H 1.08998 * 109.46853 * 299.99992 * 13 12 9 21 21 H 1.09005 * 109.46997 * 59.99822 * 13 12 9 22 22 H 1.08998 * 109.47408 * 299.99874 * 14 13 12 23 23 H 1.08994 * 109.47190 * 179.97438 * 14 13 12 24 24 H 1.09004 * 109.46963 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.47208 * 59.99704 * 15 14 13 26 26 H 1.08998 * 109.47126 * 300.00619 * 16 15 14 27 27 H 1.08996 * 109.47462 * 180.02562 * 16 15 14 28 28 H 1.09009 * 109.47216 * 299.99697 * 17 12 9 29 29 H 1.08998 * 109.47141 * 59.99668 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 9 0.4472 -2.5735 -1.1420 12 6 2.2454 -3.6620 0.0018 13 6 3.1260 -3.5815 -1.2468 14 6 4.1207 -4.7440 -1.2452 15 6 3.3561 -6.0693 -1.2449 16 6 2.4756 -6.1499 0.0037 17 6 1.4805 -4.9870 0.0012 18 1 -0.4850 -0.8401 -0.0004 19 1 2.8714 -3.6038 0.8922 20 1 2.5000 -3.6396 -2.1372 21 1 3.6710 -2.6375 -1.2468 22 1 4.7466 -4.6854 -0.3548 23 1 4.7477 -4.6869 -2.1349 24 1 4.0648 -6.8976 -1.2433 25 1 2.7302 -6.1279 -2.1353 26 1 3.1016 -6.0912 0.8941 27 1 1.9313 -7.0942 0.0042 28 1 0.8528 -5.0447 0.8906 29 1 0.8548 -5.0449 -0.8894 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260936056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:22 Heat of formation + Delta-G solvation = -96.585318 kcal Electronic energy + Delta-G solvation = -11941.683654 eV Core-core repulsion = 9777.193178 eV Total energy + Delta-G solvation = -2164.490476 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.86058 -37.83185 -33.12504 -31.03399 -30.26815 -26.16827 -23.16749 -21.98632 -20.49568 -18.97269 -17.03379 -15.21044 -14.64678 -13.95210 -13.79219 -13.64609 -13.54553 -13.17963 -12.41172 -11.75573 -11.72911 -11.20050 -10.89120 -10.75988 -10.61743 -10.53467 -10.28894 -10.10887 -9.84955 -9.60245 -9.03958 -8.46422 -8.26587 -6.41760 -4.22999 3.41118 3.45748 3.61462 4.49334 5.12904 5.20499 5.21592 5.34356 5.70859 5.76830 5.92771 5.98695 6.00584 6.01544 6.07792 6.35270 6.45504 6.48292 6.62314 6.65316 6.68501 6.86968 7.07973 7.10624 7.63672 7.95461 8.35471 8.76668 9.57791 10.97039 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.062044 B = 0.011949 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.181054 B = 2342.682926 C = 2599.877386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 1.074 2.926 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.634 4.634 8 H 0.061 0.939 9 C 0.202 3.798 10 H 0.024 0.976 11 F -0.244 7.244 12 C -0.097 4.097 13 C -0.103 4.103 14 C -0.119 4.119 15 C -0.117 4.117 16 C -0.115 4.115 17 C -0.118 4.118 18 H 0.275 0.725 19 H 0.068 0.932 20 H 0.058 0.942 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -8.617 -0.482 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.179 4.179 3 Si 0.902 3.098 4 H -0.213 1.213 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.672 4.672 8 H 0.079 0.921 9 C 0.166 3.834 10 H 0.042 0.958 11 F -0.225 7.225 12 C -0.116 4.116 13 C -0.141 4.141 14 C -0.157 4.157 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.156 4.156 18 H 0.086 0.914 19 H 0.087 0.913 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.639 -6.985 -0.514 8.992 hybrid contribution 0.131 -1.705 0.000 1.710 sum 5.770 -8.690 -0.514 10.444 Atomic orbital electron populations 1.70683 1.06979 1.31470 1.44179 1.25932 0.96469 1.02979 0.92511 0.83481 0.74708 0.74813 0.76790 1.21296 1.21308 1.20879 1.22322 0.94867 0.91372 1.58653 0.92091 1.19231 0.87564 0.94658 0.81956 0.95817 1.92680 1.76573 1.97504 1.55783 1.21575 0.97437 0.94053 0.98491 1.21438 0.97004 0.97598 0.98052 1.21587 0.98049 0.95205 1.00857 1.21524 0.98371 0.97259 0.98318 1.21517 0.97823 0.97997 0.97952 1.21629 0.97666 0.94704 1.01564 0.91406 0.91326 0.92368 0.90995 0.92577 0.92804 0.92951 0.92309 0.92449 0.92848 0.92762 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.56 55.43 0.75 -27.21 15 2 C 0.03 0.82 5.42 -17.82 -0.10 0.72 15 3 Si 1.07 25.36 29.90 -169.99 -5.08 20.28 15 4 H -0.29 -6.45 7.11 56.52 0.40 -6.04 15 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 7 C -0.63 -17.98 8.13 -34.44 -0.28 -18.26 15 8 H 0.06 1.68 6.71 -52.49 -0.35 1.33 15 9 C 0.20 5.27 2.43 -27.88 -0.07 5.20 15 10 H 0.02 0.65 8.01 -51.93 -0.42 0.24 15 11 F -0.24 -6.79 14.93 2.25 0.03 -6.76 15 12 C -0.10 -2.04 2.06 -90.62 -0.19 -2.22 15 13 C -0.10 -2.05 4.83 -26.73 -0.13 -2.18 15 14 C -0.12 -1.88 5.92 -26.73 -0.16 -2.04 15 15 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 15 16 C -0.12 -1.70 5.93 -26.70 -0.16 -1.86 15 17 C -0.12 -2.14 5.08 -26.71 -0.14 -2.27 15 18 H 0.27 8.65 6.59 -40.82 -0.27 8.38 15 19 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 20 H 0.06 1.22 7.80 -51.93 -0.41 0.81 15 21 H 0.07 1.54 6.62 -51.93 -0.34 1.20 15 22 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.06 0.82 8.14 -51.93 -0.42 0.39 15 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 28 H 0.05 0.95 8.14 -51.92 -0.42 0.53 15 29 H 0.06 1.18 7.80 -51.93 -0.41 0.77 15 LS Contribution 234.11 15.07 3.53 3.53 Total: -1.00 -30.40 234.11 -6.51 -36.91 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.37 Total: -2.00 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.37 Total: -24.75 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 0.75 Total: -27.21 kcal Atomic # 9 Polarization: -6.79 SS G_CDS: 0.03 Total: -6.76 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.28 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.40 -6.51 -36.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.674 kcal (2) G-P(sol) polarization free energy of solvation -30.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds