Wall clock time and date at job start Mon Mar 30 2020 02:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 11 11 F 1.39898 * 109.47270 * 59.99891 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.53004 * 109.47053 * 300.00128 * 12 9 7 14 14 C 1.52996 * 109.47169 * 179.97438 * 13 12 9 15 15 C 1.53005 * 109.46949 * 60.00048 * 14 13 12 16 16 C 1.52998 * 109.47019 * 299.99672 * 15 14 13 17 17 C 1.52992 * 109.47319 * 180.02562 * 12 9 7 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 1.08998 * 109.46846 * 59.99549 * 12 9 7 20 20 H 1.08998 * 109.46853 * 299.99992 * 13 12 9 21 21 H 1.09005 * 109.46997 * 59.99822 * 13 12 9 22 22 H 1.08998 * 109.47408 * 299.99874 * 14 13 12 23 23 H 1.08994 * 109.47190 * 179.97438 * 14 13 12 24 24 H 1.09004 * 109.46963 * 180.02562 * 15 14 13 25 25 H 1.08998 * 109.47208 * 59.99704 * 15 14 13 26 26 H 1.08998 * 109.47126 * 300.00619 * 16 15 14 27 27 H 1.08996 * 109.47462 * 180.02562 * 16 15 14 28 28 H 1.09009 * 109.47216 * 299.99697 * 17 12 9 29 29 H 1.08998 * 109.47141 * 59.99668 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5566 0.8903 11 9 0.4472 -2.5735 -1.1420 12 6 2.2454 -3.6620 0.0018 13 6 3.1260 -3.5815 -1.2468 14 6 4.1207 -4.7440 -1.2452 15 6 3.3561 -6.0693 -1.2449 16 6 2.4756 -6.1499 0.0037 17 6 1.4805 -4.9870 0.0012 18 1 -0.4850 -0.8401 -0.0004 19 1 2.8714 -3.6038 0.8922 20 1 2.5000 -3.6396 -2.1372 21 1 3.6710 -2.6375 -1.2468 22 1 4.7466 -4.6854 -0.3548 23 1 4.7477 -4.6869 -2.1349 24 1 4.0648 -6.8976 -1.2433 25 1 2.7302 -6.1279 -2.1353 26 1 3.1016 -6.0912 0.8941 27 1 1.9313 -7.0942 0.0042 28 1 0.8528 -5.0447 0.8906 29 1 0.8548 -5.0449 -0.8894 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260936056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:22 Heat of formation + Delta-G solvation = -113.836695 kcal Electronic energy + Delta-G solvation = -11942.431730 eV Core-core repulsion = 9777.193178 eV Total energy + Delta-G solvation = -2165.238552 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.06452 -39.27270 -35.26570 -32.70442 -31.64728 -28.13120 -25.10296 -23.41257 -22.07850 -20.48905 -19.20826 -16.85010 -16.66360 -15.83957 -15.48910 -15.41455 -15.01240 -14.75401 -14.20132 -13.51576 -13.16810 -12.92076 -12.73192 -12.66481 -12.09038 -11.97255 -11.94618 -11.86563 -11.34586 -11.13260 -10.86471 -10.59305 -10.31321 -8.74886 -6.57321 1.50422 1.60310 1.77980 2.51927 3.09293 3.78877 3.83997 3.86447 4.26389 4.31849 4.41383 4.52799 4.59928 4.64097 4.73294 4.79821 4.98907 5.13753 5.17241 5.26367 5.32034 5.37028 5.43482 5.51906 5.67091 5.80950 6.07009 6.40121 7.32985 8.62726 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.062044 B = 0.011949 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.181054 B = 2342.682926 C = 2599.877386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.028 4.028 3 Si 1.124 2.876 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.284 1.284 7 C -0.643 4.643 8 H 0.067 0.933 9 C 0.190 3.810 10 H 0.002 0.998 11 F -0.256 7.256 12 C -0.091 4.091 13 C -0.101 4.101 14 C -0.113 4.113 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.115 4.115 18 H 0.258 0.742 19 H 0.072 0.928 20 H 0.038 0.962 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.053 0.947 29 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.815 -9.622 -0.393 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.228 4.228 3 Si 0.944 3.056 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.210 1.210 7 C -0.681 4.681 8 H 0.085 0.915 9 C 0.154 3.846 10 H 0.019 0.981 11 F -0.238 7.238 12 C -0.110 4.110 13 C -0.138 4.138 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.153 4.153 18 H 0.067 0.933 19 H 0.091 0.909 20 H 0.057 0.943 21 H 0.067 0.933 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.594 -8.021 -0.420 11.053 hybrid contribution -0.508 -1.413 -0.024 1.502 sum 7.085 -9.434 -0.445 11.807 Atomic orbital electron populations 1.70833 1.08157 1.30400 1.46897 1.27586 0.96482 1.07280 0.91411 0.82878 0.74146 0.70528 0.78089 1.19158 1.19139 1.20979 1.22724 0.95388 0.92457 1.57500 0.91519 1.19414 0.88020 0.96556 0.80599 0.98053 1.92639 1.77179 1.97649 1.56339 1.21493 0.96575 0.93552 0.99361 1.21375 0.97296 0.98760 0.96391 1.21544 0.97199 0.94008 1.02256 1.21542 0.98705 0.97292 0.97766 1.21504 0.97263 0.97098 0.98828 1.21595 0.98216 0.94642 1.00859 0.93253 0.90922 0.94294 0.93256 0.91524 0.91080 0.89698 0.92734 0.91335 0.90492 0.92829 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.11 13.56 21.45 0.29 -58.82 15 2 C -0.03 -1.64 5.42 84.65 0.46 -1.18 15 3 Si 1.12 50.62 29.90 68.60 2.05 52.67 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 15 6 H -0.28 -12.79 7.11 99.48 0.71 -12.08 15 7 C -0.64 -36.94 8.13 25.60 0.21 -36.73 15 8 H 0.07 3.68 6.71 -2.91 -0.02 3.66 15 9 C 0.19 10.19 2.43 29.85 0.07 10.26 15 10 H 0.00 0.10 8.01 -2.39 -0.02 0.08 15 11 F -0.26 -14.81 14.93 44.97 0.67 -14.14 15 12 C -0.09 -3.82 2.06 -10.79 -0.02 -3.84 15 13 C -0.10 -3.93 4.83 30.59 0.15 -3.79 15 14 C -0.11 -3.21 5.92 30.59 0.18 -3.03 15 15 C -0.12 -2.87 5.92 30.60 0.18 -2.69 15 16 C -0.11 -2.88 5.93 30.61 0.18 -2.69 15 17 C -0.12 -4.08 5.08 30.61 0.16 -3.92 15 18 H 0.26 16.89 6.59 -92.70 -0.61 16.28 15 19 H 0.07 2.96 8.14 -2.39 -0.02 2.94 15 20 H 0.04 1.63 7.80 -2.39 -0.02 1.62 15 21 H 0.05 2.10 6.62 -2.38 -0.02 2.09 15 22 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 15 24 H 0.08 1.64 8.14 -2.38 -0.02 1.62 15 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 15 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.05 1.86 8.14 -2.38 -0.02 1.84 15 29 H 0.05 1.79 7.80 -2.39 -0.02 1.77 15 Total: -1.00 -66.37 234.11 5.84 -60.53 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 1.26 Total: 7.37 kcal Atomic # 6 Polarization: -49.18 SS G_CDS: 1.56 Total: -47.61 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.29 Total: -58.82 kcal Atomic # 9 Polarization: -14.81 SS G_CDS: 0.67 Total: -14.14 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -66.37 5.84 -60.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.308 kcal (2) G-P(sol) polarization free energy of solvation -66.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds