Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48500 * 109.46868 * 269.99951 * 3 2 1 5 5 H 1.48502 * 109.47160 * 29.99603 * 3 2 1 6 6 H 1.48496 * 109.47472 * 150.00150 * 3 2 1 7 7 C 1.37881 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00467 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99714 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47148 * 59.99231 * 9 7 2 11 11 F 1.39904 * 109.46782 * 299.99835 * 9 7 2 12 12 C 1.52997 * 109.47054 * 179.97438 * 9 7 2 13 13 C 1.52996 * 109.46975 * 184.99562 * 12 9 7 14 14 C 1.53000 * 109.47328 * 180.02562 * 13 12 9 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 13 17 17 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 18 18 H 0.96995 * 120.00028 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.47280 * 305.00097 * 12 9 7 20 20 H 1.09004 * 109.47368 * 60.00217 * 13 12 9 21 21 H 1.09001 * 109.47372 * 300.00372 * 13 12 9 22 22 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 23 23 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 24 24 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 25 25 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 26 26 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 27 27 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.47045 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.47375 * 59.99966 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 9 0.4463 -2.5730 1.1426 12 6 2.2453 -3.6621 0.0005 13 6 1.4845 -4.9835 -0.1251 14 6 2.4786 -6.1465 -0.1244 15 6 3.2729 -6.1377 1.1832 16 6 4.0338 -4.8162 1.3089 17 6 3.0396 -3.6533 1.3082 18 1 -0.4850 0.8400 0.0004 19 1 2.9294 -3.5552 -0.8412 20 1 0.9182 -4.9897 -1.0565 21 1 0.8003 -5.0904 0.7167 22 1 1.9366 -7.0879 -0.2144 23 1 3.1631 -6.0399 -0.9660 24 1 2.5886 -6.2443 2.0248 25 1 3.9815 -6.9659 1.1836 26 1 4.7182 -4.7095 0.4673 27 1 4.5993 -4.8097 2.2407 28 1 3.5816 -2.7118 1.3973 29 1 2.3551 -3.7599 2.1498 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260936057.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = -92.000894 kcal Electronic energy + Delta-G solvation = -11894.038499 eV Core-core repulsion = 9729.746819 eV Total energy + Delta-G solvation = -2164.291680 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.46588 -37.73845 -32.91188 -31.03149 -30.19408 -26.57926 -23.19428 -21.96188 -20.25636 -18.82574 -16.54163 -15.12694 -14.59382 -14.17192 -13.75929 -13.57041 -13.39266 -12.89017 -12.15749 -11.66429 -11.55450 -11.39575 -10.96111 -10.71129 -10.63484 -10.45631 -10.32261 -10.12432 -9.74536 -9.54544 -8.87244 -8.52355 -8.43527 -6.06621 -4.21230 3.28767 3.35154 3.38757 4.38668 5.19858 5.26699 5.28121 5.29348 5.78734 5.85617 6.01866 6.05820 6.08107 6.11394 6.16473 6.42437 6.56017 6.58929 6.75070 6.77726 6.80735 7.03105 7.17803 7.27083 7.82039 7.92728 8.17419 8.82981 9.51984 11.00826 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.062803 B = 0.011742 C = 0.010701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.732068 B = 2384.033425 C = 2616.023363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.558 4.558 8 H 0.065 0.935 9 C 0.220 3.780 10 H 0.031 0.969 11 F -0.237 7.237 12 C -0.104 4.104 13 C -0.117 4.117 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.119 4.119 17 C -0.104 4.104 18 H 0.263 0.737 19 H 0.068 0.932 20 H 0.055 0.945 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 -8.312 0.408 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.596 4.596 8 H 0.084 0.916 9 C 0.184 3.816 10 H 0.049 0.951 11 F -0.218 7.218 12 C -0.123 4.123 13 C -0.155 4.155 14 C -0.153 4.153 15 C -0.154 4.154 16 C -0.157 4.157 17 C -0.142 4.142 18 H 0.073 0.927 19 H 0.087 0.913 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.070 -8.199 0.440 9.650 hybrid contribution 0.352 0.958 0.007 1.021 sum 5.421 -7.241 0.448 9.057 Atomic orbital electron populations 1.70007 1.06144 1.26992 1.48111 1.25087 0.94822 0.99609 0.93733 0.86529 0.79922 0.82982 0.78167 1.20457 1.21064 1.19655 1.21506 0.93556 0.90525 1.54039 0.91644 1.18999 0.87043 0.92763 0.82757 0.95118 1.92665 1.76490 1.97370 1.55263 1.21722 0.98025 0.94650 0.97909 1.21615 0.97700 0.94662 1.01475 1.21516 0.98197 0.98121 0.97499 1.21518 0.98685 0.97214 0.98030 1.21585 0.98136 0.95309 1.00657 1.21427 0.97359 0.97417 0.97988 0.92682 0.91346 0.92638 0.92056 0.92942 0.92496 0.92317 0.93071 0.92617 0.92927 0.91254 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.47 12.95 55.43 0.72 -25.75 15 2 C 0.07 2.07 5.42 -17.82 -0.10 1.98 15 3 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 15 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.56 -15.69 8.15 -34.44 -0.28 -15.97 15 8 H 0.07 1.77 7.05 -52.49 -0.37 1.40 15 9 C 0.22 5.79 2.81 -27.88 -0.08 5.71 15 10 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 11 F -0.24 -6.73 15.59 2.25 0.04 -6.70 15 12 C -0.10 -2.19 2.00 -90.62 -0.18 -2.37 15 13 C -0.12 -2.12 5.12 -26.73 -0.14 -2.26 15 14 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 15 15 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 15 16 C -0.12 -1.87 5.92 -26.73 -0.16 -2.03 15 17 C -0.10 -2.05 4.84 -26.73 -0.13 -2.18 15 18 H 0.26 7.47 8.31 -40.82 -0.34 7.13 15 19 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.06 1.16 7.94 -51.93 -0.41 0.75 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 15 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 28 H 0.07 1.46 6.95 -51.93 -0.36 1.10 15 29 H 0.06 1.24 7.68 -51.93 -0.40 0.84 15 LS Contribution 236.72 15.07 3.57 3.57 Total: -1.00 -29.92 236.72 -6.56 -36.48 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -4.48 Total: -3.31 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -1.38 Total: -20.81 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.72 Total: -25.75 kcal Atomic # 9 Polarization: -6.73 SS G_CDS: 0.04 Total: -6.70 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -29.92 -6.56 -36.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936057.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.522 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds