Wall clock time and date at job start Mon Mar 30 2020 02:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00214 * 2 1 4 4 H 1.48500 * 109.46868 * 269.99951 * 3 2 1 5 5 H 1.48502 * 109.47160 * 29.99603 * 3 2 1 6 6 H 1.48496 * 109.47472 * 150.00150 * 3 2 1 7 7 C 1.37881 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00467 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99714 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.47148 * 59.99231 * 9 7 2 11 11 F 1.39904 * 109.46782 * 299.99835 * 9 7 2 12 12 C 1.52997 * 109.47054 * 179.97438 * 9 7 2 13 13 C 1.52996 * 109.46975 * 184.99562 * 12 9 7 14 14 C 1.53000 * 109.47328 * 180.02562 * 13 12 9 15 15 C 1.52997 * 109.47060 * 60.00126 * 14 13 12 16 16 C 1.53006 * 109.47127 * 300.00449 * 15 14 13 17 17 C 1.52997 * 109.47164 * 59.99836 * 16 15 14 18 18 H 0.96995 * 120.00028 * 359.97438 * 1 2 3 19 19 H 1.08992 * 109.47280 * 305.00097 * 12 9 7 20 20 H 1.09004 * 109.47368 * 60.00217 * 13 12 9 21 21 H 1.09001 * 109.47372 * 300.00372 * 13 12 9 22 22 H 1.09002 * 109.47398 * 180.02562 * 14 13 12 23 23 H 1.09001 * 109.47194 * 300.00476 * 14 13 12 24 24 H 1.08998 * 109.47533 * 59.99948 * 15 14 13 25 25 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 26 26 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 27 27 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 28 28 H 1.09002 * 109.47045 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.47375 * 59.99966 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 9 0.4463 -2.5730 1.1426 12 6 2.2453 -3.6621 0.0005 13 6 1.4845 -4.9835 -0.1251 14 6 2.4786 -6.1465 -0.1244 15 6 3.2729 -6.1377 1.1832 16 6 4.0338 -4.8162 1.3089 17 6 3.0396 -3.6533 1.3082 18 1 -0.4850 0.8400 0.0004 19 1 2.9294 -3.5552 -0.8412 20 1 0.9182 -4.9897 -1.0565 21 1 0.8003 -5.0904 0.7167 22 1 1.9366 -7.0879 -0.2144 23 1 3.1631 -6.0399 -0.9660 24 1 2.5886 -6.2443 2.0248 25 1 3.9815 -6.9659 1.1836 26 1 4.7182 -4.7095 0.4673 27 1 4.5993 -4.8097 2.2407 28 1 3.5816 -2.7118 1.3973 29 1 2.3551 -3.7599 2.1498 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260936057.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:23 Heat of formation + Delta-G solvation = -108.820685 kcal Electronic energy + Delta-G solvation = -11894.767860 eV Core-core repulsion = 9729.746819 eV Total energy + Delta-G solvation = -2165.021041 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.112 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -47.68409 -39.17057 -35.01512 -32.70681 -31.56640 -28.54258 -25.05530 -23.36093 -21.80758 -20.37008 -18.71610 -16.93366 -16.43611 -16.06130 -15.39484 -15.19144 -14.91345 -14.65755 -13.77583 -13.51106 -13.15643 -13.00387 -12.85407 -12.54502 -12.33951 -11.93363 -11.89688 -11.70957 -11.25627 -11.14859 -10.86230 -10.52435 -10.39491 -8.25315 -6.48416 1.38211 1.40439 1.51624 2.35834 3.06199 3.89022 3.94490 3.96512 4.40702 4.42181 4.54902 4.67117 4.69426 4.72456 4.84853 4.93111 5.13094 5.21434 5.27569 5.34653 5.40014 5.45621 5.51200 5.63573 5.69222 5.84006 6.06505 6.62849 7.29834 8.82990 Molecular weight = 186.11amu Principal moments of inertia in cm(-1) A = 0.062803 B = 0.011742 C = 0.010701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.732068 B = 2384.033425 C = 2616.023363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.209 3.791 10 H 0.002 0.998 11 F -0.253 7.253 12 C -0.097 4.097 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.102 4.102 18 H 0.266 0.734 19 H 0.073 0.927 20 H 0.053 0.947 21 H 0.046 0.954 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.142 -9.134 0.348 11.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.188 4.188 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.612 4.612 8 H 0.090 0.910 9 C 0.173 3.827 10 H 0.020 0.980 11 F -0.234 7.234 12 C -0.116 4.116 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.139 4.139 18 H 0.075 0.925 19 H 0.091 0.909 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.094 0.906 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.962 -9.038 0.378 11.414 hybrid contribution -0.286 1.210 0.017 1.243 sum 6.676 -7.828 0.395 10.296 Atomic orbital electron populations 1.70145 1.08000 1.28143 1.49361 1.26088 0.95725 1.03821 0.93157 0.85369 0.78610 0.77796 0.78768 1.19153 1.20804 1.18578 1.21910 0.94087 0.91575 1.53612 0.90953 1.19170 0.87424 0.95001 0.81056 0.97974 1.92619 1.77243 1.97552 1.55994 1.21599 0.97043 0.93980 0.98947 1.21583 0.98201 0.94719 1.00758 1.21496 0.97640 0.97196 0.98385 1.21536 0.99045 0.97285 0.97426 1.21542 0.97273 0.94099 1.02096 1.21366 0.97641 0.98608 0.96304 0.92502 0.90863 0.92824 0.93546 0.90647 0.91386 0.92729 0.89868 0.91567 0.91197 0.93328 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.81 12.95 21.45 0.28 -56.54 15 2 C 0.01 0.74 5.42 84.66 0.46 1.20 15 3 Si 0.97 44.35 29.54 68.60 2.03 46.37 15 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 6 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 7 C -0.57 -32.78 8.15 25.60 0.21 -32.57 15 8 H 0.07 3.92 7.05 -2.91 -0.02 3.90 15 9 C 0.21 11.35 2.81 29.85 0.08 11.43 15 10 H 0.00 0.14 8.14 -2.39 -0.02 0.12 15 11 F -0.25 -14.92 15.59 44.97 0.70 -14.22 15 12 C -0.10 -4.07 2.00 -10.80 -0.02 -4.09 15 13 C -0.11 -4.09 5.12 30.59 0.16 -3.93 15 14 C -0.11 -2.91 5.92 30.59 0.18 -2.73 15 15 C -0.12 -2.88 5.92 30.60 0.18 -2.70 15 16 C -0.11 -3.21 5.92 30.60 0.18 -3.03 15 17 C -0.10 -3.95 4.84 30.59 0.15 -3.80 15 18 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 19 H 0.07 2.97 8.14 -2.39 -0.02 2.95 15 20 H 0.05 1.89 8.14 -2.39 -0.02 1.87 15 21 H 0.05 1.76 7.94 -2.39 -0.02 1.75 15 22 H 0.07 1.69 8.14 -2.39 -0.02 1.67 15 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 24 H 0.05 1.42 8.14 -2.39 -0.02 1.40 15 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 27 H 0.07 1.77 8.14 -2.39 -0.02 1.75 15 28 H 0.05 2.04 6.95 -2.39 -0.02 2.03 15 29 H 0.04 1.71 7.68 -2.39 -0.02 1.69 15 Total: -1.00 -65.09 236.72 5.68 -59.40 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: 1.10 Total: 5.20 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 1.58 Total: -40.22 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.28 Total: -56.54 kcal Atomic # 9 Polarization: -14.92 SS G_CDS: 0.70 Total: -14.22 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.09 5.68 -59.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936057.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.420 kcal (2) G-P(sol) polarization free energy of solvation -65.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds