Wall clock time and date at job start Mon Mar 30 2020 01:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.57632 * 2 1 4 4 C 1.53096 * 109.57294 * 239.61074 * 2 1 3 5 5 C 1.52583 * 109.95440 * 177.16989 * 4 2 1 6 6 H 1.08994 * 109.19313 * 310.38007 * 5 4 2 7 7 C 1.50699 * 109.22554 * 190.99623 * 5 4 2 8 8 H 1.08004 * 120.00282 * 268.02946 * 7 5 4 9 9 C 1.37875 * 119.99837 * 88.03252 * 7 5 4 10 10 N 1.31513 * 120.00236 * 353.31724 * 9 7 5 11 11 Si 1.86805 * 120.00128 * 173.31894 * 9 7 5 12 12 H 1.48501 * 109.46910 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47076 * 239.99898 * 11 9 7 14 14 H 1.48499 * 109.46889 * 119.99822 * 11 9 7 15 15 C 1.52578 * 110.72511 * 70.67826 * 5 4 2 16 16 C 1.53099 * 109.95481 * 289.32433 * 15 5 4 17 17 S 1.81743 * 108.84147 * 63.02576 * 16 15 5 18 18 H 1.08999 * 109.47120 * 299.74599 * 1 2 3 19 19 H 1.09000 * 109.47053 * 59.74103 * 1 2 3 20 20 H 1.08999 * 109.47627 * 179.74203 * 1 2 3 21 21 H 1.09004 * 109.39301 * 57.02392 * 4 2 1 22 22 H 1.08995 * 109.39329 * 297.31855 * 4 2 1 23 23 H 0.96998 * 119.99920 * 354.55329 * 10 9 7 24 24 H 1.09003 * 109.39510 * 49.47101 * 15 5 4 25 25 H 1.09001 * 109.39183 * 169.17358 * 15 5 4 26 26 H 1.09006 * 109.57677 * 182.83447 * 16 15 5 27 27 H 1.08995 * 109.57507 * 303.08625 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0429 -0.7297 -1.2443 5 6 3.5671 -0.6741 -1.2894 6 1 3.8927 0.3550 -1.1379 7 6 4.0414 -1.1512 -2.6379 8 1 4.2834 -2.1931 -2.7877 9 6 4.1664 -0.2577 -3.6804 10 7 3.7488 0.9813 -3.5384 11 14 4.9290 -0.8068 -5.2949 12 1 5.3139 -2.2379 -5.1990 13 1 6.1347 0.0128 -5.5769 14 1 3.9439 -0.6321 -6.3923 15 6 4.1720 -1.5577 -0.2025 16 6 3.9292 -0.9330 1.1740 17 16 2.1389 -0.8629 1.4791 18 1 -0.3633 0.5099 0.8922 19 1 -0.3633 0.5179 -0.8877 20 1 -0.3634 -1.0276 -0.0046 21 1 1.6369 -0.2530 -2.1365 22 1 1.7196 -1.7701 -1.2127 23 1 3.2818 1.2460 -2.7304 24 1 3.7096 -2.5441 -0.2389 25 1 5.2444 -1.6559 -0.3713 26 1 4.4069 -1.5425 1.9411 27 1 4.3452 0.0742 1.1964 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946864.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:23 Heat of formation + Delta-G solvation = -34.554813 kcal Electronic energy + Delta-G solvation = -9902.712466 eV Core-core repulsion = 8171.291916 eV Total energy + Delta-G solvation = -1731.420550 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -36.70514 -32.89924 -32.08419 -27.97365 -25.32473 -23.01252 -21.10550 -19.76335 -16.81128 -16.20389 -14.35314 -13.80628 -13.74765 -13.30199 -13.26611 -13.04153 -11.99397 -11.49683 -11.26653 -11.21722 -11.00322 -10.69732 -10.47379 -10.15656 -9.67521 -9.43165 -9.15159 -8.53272 -8.33092 -7.17139 -6.39649 -4.11634 2.34161 3.08278 3.41552 3.44145 3.58228 4.49141 5.23807 5.41180 5.47574 5.54450 5.66569 5.79143 6.01897 6.10722 6.21334 6.29335 6.44232 6.46598 6.75515 6.86877 6.94953 7.37985 7.54085 8.17706 8.41139 8.82826 9.60510 10.98399 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.058818 B = 0.012694 C = 0.011199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.926534 B = 2205.302097 C = 2499.531492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.045 4.045 3 H 0.079 0.921 4 C -0.103 4.103 5 C 0.021 3.979 6 H 0.031 0.969 7 C -0.592 4.592 8 H 0.050 0.950 9 C 0.020 3.980 10 N -0.912 5.912 11 Si 1.070 2.930 12 H -0.289 1.289 13 H -0.286 1.286 14 H -0.288 1.288 15 C -0.104 4.104 16 C -0.072 4.072 17 S -0.304 6.304 18 H 0.053 0.947 19 H 0.067 0.933 20 H 0.060 0.940 21 H 0.065 0.935 22 H 0.055 0.945 23 H 0.270 0.730 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.088 0.912 27 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -2.267 5.870 6.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.174 4.174 3 H 0.097 0.903 4 C -0.142 4.142 5 C 0.003 3.997 6 H 0.049 0.951 7 C -0.630 4.630 8 H 0.068 0.932 9 C -0.184 4.184 10 N -0.548 5.548 11 Si 0.898 3.102 12 H -0.215 1.215 13 H -0.213 1.213 14 H -0.215 1.215 15 C -0.143 4.143 16 C -0.220 4.220 17 S -0.078 6.078 18 H 0.073 0.927 19 H 0.086 0.914 20 H 0.079 0.921 21 H 0.084 0.916 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.607 -2.110 5.265 6.242 hybrid contribution 0.202 -0.064 0.549 0.589 sum -2.404 -2.174 5.814 6.656 Atomic orbital electron populations 1.21605 0.93152 1.02346 1.01680 1.23317 0.98076 1.00731 0.95260 0.90253 1.22060 0.99610 0.98798 0.93729 1.18854 0.90479 0.95830 0.94568 0.95098 1.21945 1.48622 0.96931 0.95498 0.93182 1.25821 0.95908 0.93948 1.02742 1.70736 1.35963 1.17942 1.30165 0.83541 0.76549 0.74982 0.75084 1.21504 1.21253 1.21468 1.21772 1.01323 0.99572 0.91674 1.23477 0.92555 1.03948 1.02060 1.86268 1.09218 1.79373 1.32975 0.92743 0.91417 0.92112 0.91604 0.92662 0.91849 0.92373 0.91775 0.89318 0.90707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.22 37.16 0.34 -1.73 15 2 C -0.05 -0.86 3.11 -26.68 -0.08 -0.95 15 3 H 0.08 1.56 8.14 -51.93 -0.42 1.14 15 4 C -0.10 -2.27 4.15 -26.90 -0.11 -2.38 15 5 C 0.02 0.52 1.49 -92.20 -0.14 0.38 15 6 H 0.03 0.82 6.89 -51.93 -0.36 0.46 15 7 C -0.59 -16.20 8.20 -34.44 -0.28 -16.48 15 8 H 0.05 1.38 7.82 -52.48 -0.41 0.97 15 9 C 0.02 0.56 5.45 -17.82 -0.10 0.46 15 10 N -0.91 -26.89 13.55 55.43 0.75 -26.14 15 11 Si 1.07 24.89 29.91 -169.99 -5.08 19.81 15 12 H -0.29 -6.43 7.11 56.52 0.40 -6.03 15 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 15 14 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 15 C -0.10 -2.19 5.04 -26.90 -0.14 -2.32 15 16 C -0.07 -1.31 6.45 37.21 0.24 -1.07 15 17 S -0.30 -5.61 21.70 -107.50 -2.33 -7.94 15 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 19 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 20 H 0.06 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.58 7.80 -51.93 -0.41 1.18 15 22 H 0.05 1.22 8.06 -51.93 -0.42 0.81 15 23 H 0.27 7.89 6.47 -40.82 -0.26 7.62 15 24 H 0.06 1.22 8.06 -51.93 -0.42 0.80 15 25 H 0.06 1.34 8.08 -51.93 -0.42 0.92 15 26 H 0.09 1.40 8.14 -51.92 -0.42 0.98 15 27 H 0.07 1.35 8.14 -51.93 -0.42 0.93 15 LS Contribution 231.62 15.07 3.49 3.49 Total: -1.00 -28.49 231.62 -7.47 -35.95 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.03 Total: -1.09 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -0.26 Total: -24.09 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.75 Total: -26.14 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Atomic # 16 Polarization: -5.61 SS G_CDS: -2.33 Total: -7.94 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.49 -7.47 -35.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946864.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.400 kcal (2) G-P(sol) polarization free energy of solvation -28.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds