Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.57978 * 2 1 4 4 C 1.53097 * 109.57450 * 120.26253 * 2 1 3 5 5 C 1.52577 * 109.96267 * 56.90623 * 4 2 1 6 6 H 1.09003 * 109.22539 * 310.39933 * 5 4 2 7 7 C 1.50698 * 109.22976 * 190.99592 * 5 4 2 8 8 H 1.08002 * 120.00143 * 353.84777 * 7 5 4 9 9 C 1.37877 * 119.99666 * 173.83877 * 7 5 4 10 10 N 1.31525 * 119.99487 * 165.09118 * 9 7 5 11 11 Si 1.86793 * 120.00436 * 345.09792 * 9 7 5 12 12 H 1.48506 * 109.47108 * 269.99362 * 11 9 7 13 13 H 1.48500 * 109.47299 * 29.99255 * 11 9 7 14 14 H 1.48499 * 109.47418 * 150.00022 * 11 9 7 15 15 C 1.52583 * 110.69003 * 70.69541 * 5 4 2 16 16 C 1.53120 * 109.94838 * 289.26595 * 15 5 4 17 17 S 1.81744 * 108.80490 * 63.08443 * 16 15 5 18 18 H 1.09002 * 109.46563 * 299.74102 * 1 2 3 19 19 H 1.08999 * 109.47029 * 59.73786 * 1 2 3 20 20 H 1.08995 * 109.47672 * 179.74431 * 1 2 3 21 21 H 1.09003 * 109.38902 * 296.75348 * 4 2 1 22 22 H 1.09003 * 109.31042 * 177.00751 * 4 2 1 23 23 H 0.96997 * 119.99839 * 354.91741 * 10 9 7 24 24 H 1.08999 * 109.39180 * 49.45636 * 15 5 4 25 25 H 1.08998 * 109.39113 * 169.15808 * 15 5 4 26 26 H 1.09001 * 109.60599 * 303.27746 * 16 15 5 27 27 H 1.09003 * 109.68168 * 182.93790 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0269 0.0000 4 6 2.0429 -0.7270 1.2459 5 6 1.4796 -2.1442 1.2909 6 1 0.4012 -2.1070 1.1368 7 6 1.7674 -2.7500 2.6405 8 1 2.3830 -2.2184 3.3509 9 6 1.2444 -3.9830 2.9682 10 7 1.7174 -4.6440 4.0023 11 14 -0.1354 -4.7147 1.9437 12 1 -1.4447 -4.2885 2.5001 13 1 -0.0157 -4.2408 0.5414 14 1 -0.0432 -6.1965 1.9751 15 6 2.1125 -3.0106 0.2060 16 6 1.6074 -2.5740 -1.1720 17 16 2.1420 -0.8640 -1.4772 18 1 -0.3632 0.5098 0.8923 19 1 -0.3633 0.5179 -0.8876 20 1 -0.3634 -1.0276 -0.0046 21 1 1.7280 -0.1839 2.1371 22 1 3.1316 -0.7711 1.2149 23 1 2.4820 -4.2994 4.4897 24 1 3.1967 -2.9048 0.2450 25 1 1.8460 -4.0539 0.3747 26 1 0.5189 -2.6262 -1.1959 27 1 2.0214 -3.2286 -1.9390 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946865.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = -41.397314 kcal Electronic energy + Delta-G solvation = -10091.340012 eV Core-core repulsion = 8359.622749 eV Total energy + Delta-G solvation = -1731.717263 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.75294 -34.78995 -33.36436 -30.27379 -27.28764 -24.24252 -23.29168 -20.65915 -19.75928 -17.70968 -15.98578 -15.86385 -15.38362 -14.96807 -14.65421 -14.13453 -14.05145 -13.74550 -12.95716 -12.65262 -12.58661 -12.29935 -12.06004 -11.76394 -11.35469 -11.21507 -10.79196 -10.52231 -10.44097 -8.76018 -8.57404 -6.37712 0.93622 1.46675 1.50425 1.62158 1.69357 2.50132 3.05533 3.88457 3.95032 4.10171 4.19247 4.30597 4.48596 4.63107 4.68351 4.83862 4.90712 5.01024 5.09250 5.15960 5.26947 5.46608 5.71233 6.00624 6.09385 6.56301 7.40321 8.63329 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.052401 B = 0.015452 C = 0.014625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.216203 B = 1811.622194 C = 1914.127801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 H 0.117 0.883 4 C -0.094 4.094 5 C 0.011 3.989 6 H 0.038 0.962 7 C -0.598 4.598 8 H 0.013 0.987 9 C -0.023 4.023 10 N -0.945 5.945 11 Si 1.080 2.920 12 H -0.275 1.275 13 H -0.229 1.229 14 H -0.290 1.290 15 C -0.114 4.114 16 C -0.072 4.072 17 S -0.293 6.293 18 H 0.070 0.930 19 H 0.079 0.921 20 H 0.052 0.948 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.251 0.749 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 6.603 -11.267 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 H 0.135 0.865 4 C -0.133 4.133 5 C -0.008 4.008 6 H 0.056 0.944 7 C -0.635 4.635 8 H 0.032 0.968 9 C -0.220 4.220 10 N -0.581 5.581 11 Si 0.901 3.099 12 H -0.201 1.201 13 H -0.152 1.152 14 H -0.217 1.217 15 C -0.153 4.153 16 C -0.220 4.220 17 S -0.067 6.067 18 H 0.089 0.911 19 H 0.098 0.902 20 H 0.071 0.929 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.019 5.756 -12.260 14.128 hybrid contribution 1.000 0.635 2.009 2.332 sum -3.018 6.391 -10.251 12.452 Atomic orbital electron populations 1.22077 0.92330 1.02613 1.03185 1.23217 0.99577 1.00935 0.93273 0.86549 1.21588 0.99504 0.96346 0.95869 1.19023 0.96305 0.92343 0.93129 0.94408 1.22264 1.34534 1.05347 1.01400 0.96845 1.27272 1.02256 0.94631 0.97834 1.70940 1.24882 1.40370 1.21908 0.83710 0.73528 0.75496 0.77212 1.20103 1.15224 1.21661 1.22059 1.00084 1.00093 0.93072 1.23511 1.03898 0.93950 1.00625 1.86331 1.79077 1.09009 1.32258 0.91113 0.90185 0.92856 0.92508 0.93441 0.94012 0.93291 0.92581 0.89402 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.73 71.98 0.63 -3.31 15 2 C -0.04 -1.29 3.44 30.63 0.11 -1.19 15 3 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 4 C -0.09 -3.67 4.56 30.49 0.14 -3.53 15 5 C 0.01 0.49 1.27 -11.82 -0.02 0.47 15 6 H 0.04 1.63 4.47 -2.39 -0.01 1.62 15 7 C -0.60 -33.54 8.79 25.60 0.22 -33.31 15 8 H 0.01 0.83 7.99 -2.91 -0.02 0.81 15 9 C -0.02 -1.31 5.28 84.65 0.45 -0.87 15 10 N -0.94 -59.54 13.70 21.45 0.29 -59.25 15 11 Si 1.08 48.50 26.10 68.60 1.79 50.29 15 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 15 13 H -0.23 -8.70 5.56 99.48 0.55 -8.14 15 14 H -0.29 -13.21 7.11 99.48 0.71 -12.50 15 15 C -0.11 -4.64 4.19 30.50 0.13 -4.51 15 16 C -0.07 -2.33 6.08 72.02 0.44 -1.89 15 17 S -0.29 -9.29 21.75 -56.49 -1.23 -10.52 15 18 H 0.07 1.83 8.14 -2.39 -0.02 1.81 15 19 H 0.08 1.84 8.14 -2.39 -0.02 1.82 15 20 H 0.05 1.60 5.18 -2.39 -0.01 1.59 15 21 H 0.06 2.26 8.08 -2.39 -0.02 2.24 15 22 H 0.05 1.94 8.05 -2.39 -0.02 1.92 15 23 H 0.25 16.12 8.73 -92.71 -0.81 15.31 15 24 H 0.05 2.08 8.05 -2.39 -0.02 2.06 15 25 H 0.06 2.38 5.06 -2.39 -0.01 2.37 15 26 H 0.09 2.69 7.43 -2.39 -0.02 2.67 15 27 H 0.11 3.16 8.14 -2.39 -0.02 3.14 15 Total: -1.00 -62.78 219.27 3.90 -58.88 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.95 Total: 8.73 kcal Atomic # 6 Polarization: -50.23 SS G_CDS: 2.10 Total: -48.14 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: 0.29 Total: -59.25 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.79 Total: 50.29 kcal Atomic # 16 Polarization: -9.29 SS G_CDS: -1.23 Total: -10.52 kcal Total: -62.78 3.90 -58.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946865.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.487 kcal (2) G-P(sol) polarization free energy of solvation -62.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds