Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.57542 * 2 1 4 4 C 1.53094 * 109.57955 * 239.74226 * 2 1 3 5 5 C 1.52583 * 109.95646 * 303.08901 * 4 2 1 6 6 H 1.09004 * 109.22168 * 49.64518 * 5 4 2 7 7 C 1.50697 * 109.19462 * 169.02321 * 5 4 2 8 8 H 1.08007 * 119.99766 * 1.22070 * 7 5 4 9 9 C 1.37878 * 119.99995 * 181.21586 * 7 5 4 10 10 N 1.31508 * 120.00189 * 0.02562 * 9 7 5 11 11 Si 1.86798 * 119.99704 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47408 * 90.00232 * 11 9 7 13 13 H 1.48504 * 109.46995 * 209.99973 * 11 9 7 14 14 H 1.48501 * 109.47211 * 329.99939 * 11 9 7 15 15 C 1.52582 * 110.72773 * 289.32558 * 5 4 2 16 16 C 1.53101 * 109.87662 * 70.72388 * 15 5 4 17 17 S 1.81752 * 109.68038 * 120.32192 * 2 1 3 18 18 H 1.08997 * 109.47050 * 180.25571 * 1 2 3 19 19 H 1.08990 * 109.47234 * 300.26087 * 1 2 3 20 20 H 1.09002 * 109.47026 * 60.25890 * 1 2 3 21 21 H 1.09003 * 109.39118 * 182.94296 * 4 2 1 22 22 H 1.08999 * 109.39191 * 63.23709 * 4 2 1 23 23 H 0.96999 * 120.00105 * 179.97438 * 10 9 7 24 24 H 1.09002 * 109.39091 * 190.82299 * 15 5 4 25 25 H 1.08996 * 109.39211 * 310.62384 * 15 5 4 26 26 H 1.08994 * 109.57919 * 56.73075 * 16 15 5 27 27 H 1.09003 * 109.57483 * 177.12310 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0430 -0.7268 -1.2459 5 6 1.4798 -2.1442 -1.2909 6 1 0.4013 -2.1068 -1.1376 7 6 1.7684 -2.7494 -2.6405 8 1 2.3169 -2.1843 -3.3796 9 6 1.3322 -4.0245 -2.9317 10 7 0.6640 -4.7125 -2.0319 11 14 1.6906 -4.7749 -4.6044 12 1 2.9872 -5.4973 -4.5554 13 1 0.6076 -5.7257 -4.9627 14 1 1.7619 -3.6985 -5.6249 15 6 2.1118 -3.0111 -0.2059 16 6 1.6054 -2.5733 1.1709 17 16 2.1421 -0.8640 1.4772 18 1 -0.3633 -1.0276 0.0046 19 1 -0.3633 0.5178 0.8875 20 1 -0.3633 0.5098 -0.8923 21 1 3.1318 -0.7708 -1.2166 22 1 1.7281 -0.1839 -2.1370 23 1 0.3568 -5.6094 -2.2370 24 1 1.8447 -4.0543 -0.3749 25 1 3.1959 -2.9046 -0.2434 26 1 0.5169 -2.6252 1.1932 27 1 2.0199 -3.2280 1.9376 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946866.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = -39.058986 kcal Electronic energy + Delta-G solvation = -10020.019414 eV Core-core repulsion = 8288.403548 eV Total energy + Delta-G solvation = -1731.615866 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.51947 -34.69596 -32.93362 -30.15986 -27.20823 -24.78281 -23.12392 -20.63346 -18.59454 -17.51189 -16.51125 -15.59479 -15.33626 -14.67012 -14.33714 -14.03681 -13.90778 -13.47247 -13.03593 -12.84379 -12.64971 -12.37698 -11.98779 -11.89286 -11.34646 -11.14844 -10.77504 -10.52015 -10.22874 -8.58022 -8.07708 -6.23541 1.02285 1.40597 1.42366 1.51425 1.68131 2.42635 3.16662 3.98723 4.04854 4.23387 4.35888 4.40972 4.68268 4.75290 4.83018 4.95326 4.99480 5.16394 5.26485 5.34841 5.46169 5.60609 5.97655 6.09277 6.37273 6.87568 7.44334 8.93668 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.065233 B = 0.012816 C = 0.011947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.127663 B = 2184.218814 C = 2343.031553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 H 0.118 0.882 4 C -0.101 4.101 5 C 0.036 3.964 6 H 0.014 0.986 7 C -0.532 4.532 8 H 0.051 0.949 9 C 0.014 3.986 10 N -0.914 5.914 11 Si 0.951 3.049 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.270 1.270 15 C -0.107 4.107 16 C -0.060 4.060 17 S -0.303 6.303 18 H 0.043 0.957 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.261 0.739 24 H 0.075 0.925 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 5.932 3.428 6.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.167 4.167 3 H 0.136 0.864 4 C -0.139 4.139 5 C 0.018 3.982 6 H 0.032 0.968 7 C -0.570 4.570 8 H 0.069 0.931 9 C -0.184 4.184 10 N -0.554 5.554 11 Si 0.777 3.223 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.146 4.146 16 C -0.208 4.208 17 S -0.077 6.077 18 H 0.063 0.937 19 H 0.093 0.907 20 H 0.089 0.911 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.975 6.182 4.341 7.617 hybrid contribution -0.511 -1.253 -1.860 2.300 sum 0.464 4.929 2.481 5.537 Atomic orbital electron populations 1.22015 0.92945 1.02047 1.02779 1.23191 0.99077 1.00852 0.93580 0.86406 1.21724 0.99740 0.96891 0.95584 1.18660 0.95207 0.90752 0.93596 0.96769 1.21577 1.35378 1.00217 0.99877 0.93111 1.25681 0.94943 0.97668 1.00149 1.69968 1.38472 1.11718 1.35194 0.85668 0.77736 0.78299 0.80636 1.20319 1.20951 1.19420 1.21637 0.97865 1.03236 0.91852 1.23386 1.02689 0.93266 1.01433 1.86163 1.78917 1.09581 1.33005 0.93748 0.90698 0.91092 0.92874 0.91961 0.92987 0.90653 0.94637 0.91164 0.88359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 8.73 71.98 0.63 -3.82 15 2 C -0.04 -1.32 3.44 30.62 0.11 -1.21 15 3 H 0.12 3.42 8.14 -2.39 -0.02 3.40 15 4 C -0.10 -4.06 4.55 30.49 0.14 -3.92 15 5 C 0.04 1.75 1.69 -11.82 -0.02 1.73 15 6 H 0.01 0.75 5.84 -2.39 -0.01 0.74 15 7 C -0.53 -28.78 8.50 25.60 0.22 -28.56 15 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.01 0.77 5.25 84.66 0.44 1.22 15 10 N -0.91 -51.43 11.29 21.45 0.24 -51.19 15 11 Si 0.95 43.01 29.54 68.60 2.03 45.03 15 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 15 13 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 15 C -0.11 -4.99 4.92 30.49 0.15 -4.84 15 16 C -0.06 -2.35 6.07 72.02 0.44 -1.92 15 17 S -0.30 -10.87 21.75 -56.49 -1.23 -12.09 15 18 H 0.04 1.65 5.17 -2.39 -0.01 1.64 15 19 H 0.07 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.05 2.17 8.06 -2.39 -0.02 2.16 15 22 H 0.06 2.44 8.08 -2.39 -0.02 2.42 15 23 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 24 H 0.08 4.00 5.81 -2.39 -0.01 3.98 15 25 H 0.03 1.66 8.06 -2.39 -0.02 1.64 15 26 H 0.07 2.82 7.42 -2.39 -0.02 2.80 15 27 H 0.10 3.52 8.14 -2.39 -0.02 3.50 15 Total: -1.00 -56.24 224.10 4.28 -51.96 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.13 Total: 7.61 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 2.10 Total: -41.32 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.24 Total: -51.19 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: -10.87 SS G_CDS: -1.23 Total: -12.09 kcal Total: -56.24 4.28 -51.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946866.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.902 kcal (2) G-P(sol) polarization free energy of solvation -56.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds