Wall clock time and date at job start Mon Mar 30 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.57583 * 2 1 4 4 C 1.53097 * 109.57437 * 120.38576 * 2 1 3 5 5 C 1.52575 * 109.95670 * 182.83123 * 4 2 1 6 6 H 1.09000 * 109.19395 * 49.62388 * 5 4 2 7 7 C 1.50702 * 109.22600 * 169.00233 * 5 4 2 8 8 H 1.08002 * 120.00299 * 1.24138 * 7 5 4 9 9 C 1.37884 * 119.99942 * 180.95696 * 7 5 4 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 5 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 5 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.52579 * 110.72628 * 289.32301 * 5 4 2 16 16 C 1.53093 * 109.95339 * 70.67786 * 15 5 4 17 17 S 1.81743 * 109.57545 * 239.74022 * 2 1 3 18 18 H 1.08999 * 109.47719 * 180.25594 * 1 2 3 19 19 H 1.09002 * 109.47257 * 300.26194 * 1 2 3 20 20 H 1.08999 * 109.46858 * 60.25745 * 1 2 3 21 21 H 1.08998 * 109.39185 * 62.67870 * 4 2 1 22 22 H 1.09004 * 109.39255 * 302.97944 * 4 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 24 24 H 1.08997 * 109.39032 * 190.82242 * 15 5 4 25 25 H 1.08999 * 109.39478 * 310.62793 * 15 5 4 26 26 H 1.08995 * 109.57964 * 56.78204 * 16 15 5 27 27 H 1.09008 * 109.57594 * 177.16849 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0429 -0.7296 1.2443 5 6 3.5670 -0.6740 1.2895 6 1 3.8926 0.3551 1.1380 7 6 4.0413 -1.1510 2.6380 8 1 3.3256 -1.4803 3.3768 9 6 5.3894 -1.1726 2.9266 10 7 6.2609 -0.7717 2.0271 11 14 5.9777 -1.7711 4.5954 12 1 6.2196 -3.2352 4.5391 13 1 7.2391 -1.0746 4.9546 14 1 4.9424 -1.4795 5.6192 15 6 4.1720 -1.5576 0.2026 16 6 3.9292 -0.9329 -1.1738 17 16 2.1389 -0.8629 -1.4791 18 1 -0.3634 -1.0276 0.0046 19 1 -0.3634 0.5179 0.8876 20 1 -0.3633 0.5098 -0.8923 21 1 1.7195 -1.7701 1.2128 22 1 1.6368 -0.2529 2.1366 23 1 7.2093 -0.7865 2.2302 24 1 5.2444 -1.6558 0.3714 25 1 3.7084 -2.5434 0.2379 26 1 4.3431 0.0751 -1.1956 27 1 4.4069 -1.5425 -1.9409 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260946867.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:26 Heat of formation + Delta-G solvation = -28.849939 kcal Electronic energy + Delta-G solvation = -9873.255497 eV Core-core repulsion = 8142.082329 eV Total energy + Delta-G solvation = -1731.173168 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -36.46074 -33.06646 -31.49733 -28.35028 -25.35375 -22.97875 -21.06022 -19.36548 -16.33278 -16.06132 -14.68621 -14.09445 -13.44696 -13.21283 -12.85577 -12.57000 -11.87476 -11.60111 -11.47683 -11.14984 -10.94492 -10.58033 -10.43552 -10.01743 -9.61541 -9.33450 -9.01294 -8.78270 -8.33741 -7.03167 -6.03752 -4.11987 2.50715 3.26389 3.27747 3.34334 3.37333 4.38889 5.23815 5.36924 5.48968 5.77679 5.87447 6.06204 6.10154 6.18944 6.33408 6.43056 6.54218 6.68832 6.96780 7.11399 7.32655 7.64741 7.89026 8.03353 8.37822 8.91860 9.53164 11.00472 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064021 B = 0.012406 C = 0.010859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.254686 B = 2256.377794 C = 2577.866722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.042 4.042 3 H 0.079 0.921 4 C -0.105 4.105 5 C 0.040 3.960 6 H 0.025 0.975 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.891 5.891 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.114 4.114 16 C -0.063 4.063 17 S -0.318 6.318 18 H 0.060 0.940 19 H 0.064 0.936 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.058 0.942 23 H 0.261 0.739 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 0.617 -3.322 6.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.171 4.171 3 H 0.097 0.903 4 C -0.144 4.144 5 C 0.022 3.978 6 H 0.043 0.957 7 C -0.549 4.549 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.530 5.530 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.153 4.153 16 C -0.211 4.211 17 S -0.092 6.092 18 H 0.079 0.921 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.124 0.876 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.265 0.264 -4.230 7.564 hybrid contribution 1.164 0.151 1.812 2.159 sum -5.101 0.415 -2.418 5.660 Atomic orbital electron populations 1.21614 0.93289 1.02362 1.01532 1.23170 0.97801 1.00686 0.95405 0.90261 1.21895 0.99490 0.99150 0.93834 1.18625 0.88520 0.96049 0.94630 0.95715 1.21190 0.91887 1.43186 0.98603 0.92581 1.24985 0.96905 0.95249 0.96989 1.69852 1.01801 1.47541 1.33776 0.86587 0.78208 0.78858 0.84335 1.20645 1.21222 1.19918 1.21834 1.05573 0.97928 0.89944 1.23541 0.90504 1.04045 1.03000 1.86224 1.11224 1.79270 1.32503 0.92085 0.91683 0.92695 0.92278 0.92292 0.92923 0.87616 0.93823 0.90820 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.22 37.16 0.34 -1.59 15 2 C -0.04 -0.77 3.11 -26.68 -0.08 -0.85 15 3 H 0.08 1.47 8.14 -51.93 -0.42 1.04 15 4 C -0.10 -2.19 4.28 -26.90 -0.12 -2.30 15 5 C 0.04 0.99 1.84 -92.20 -0.17 0.82 15 6 H 0.02 0.66 8.08 -51.93 -0.42 0.24 15 7 C -0.51 -13.81 8.50 -34.44 -0.29 -14.10 15 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 15 9 C 0.06 1.62 5.25 -17.82 -0.09 1.53 15 10 N -0.89 -24.93 11.28 55.43 0.63 -24.30 15 11 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 15 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 14 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 15 C -0.11 -2.66 4.92 -26.90 -0.13 -2.80 15 16 C -0.06 -1.28 6.45 37.21 0.24 -1.04 15 17 S -0.32 -6.07 21.70 -107.50 -2.33 -8.41 15 18 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.06 0.87 8.14 -51.93 -0.42 0.44 15 20 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 21 H 0.06 1.25 8.06 -51.93 -0.42 0.83 15 22 H 0.06 1.20 8.08 -51.93 -0.42 0.78 15 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 24 H 0.11 2.76 5.79 -51.93 -0.30 2.46 15 25 H 0.04 1.02 8.06 -51.93 -0.42 0.60 15 26 H 0.07 1.51 8.14 -51.93 -0.42 1.09 15 27 H 0.08 1.54 8.14 -51.92 -0.42 1.12 15 LS Contribution 230.37 15.07 3.47 3.47 Total: -1.00 -27.27 230.37 -7.61 -34.88 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -4.05 Total: -1.30 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -0.30 Total: -20.33 kcal Atomic # 7 Polarization: -24.93 SS G_CDS: 0.63 Total: -24.30 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -6.07 SS G_CDS: -2.33 Total: -8.41 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -27.27 -7.61 -34.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946867.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.034 kcal (2) G-P(sol) polarization free energy of solvation -27.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds