Wall clock time and date at job start Mon Mar 30 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.57583 * 2 1 4 4 C 1.53097 * 109.57437 * 120.38576 * 2 1 3 5 5 C 1.52575 * 109.95670 * 182.83123 * 4 2 1 6 6 H 1.09000 * 109.19395 * 49.62388 * 5 4 2 7 7 C 1.50702 * 109.22600 * 169.00233 * 5 4 2 8 8 H 1.08002 * 120.00299 * 1.24138 * 7 5 4 9 9 C 1.37884 * 119.99942 * 180.95696 * 7 5 4 10 10 N 1.31514 * 119.99698 * 0.28408 * 9 7 5 11 11 Si 1.86794 * 119.99837 * 180.27476 * 9 7 5 12 12 H 1.48501 * 109.47188 * 90.00793 * 11 9 7 13 13 H 1.48501 * 109.47085 * 210.00372 * 11 9 7 14 14 H 1.48498 * 109.47634 * 330.00608 * 11 9 7 15 15 C 1.52579 * 110.72628 * 289.32301 * 5 4 2 16 16 C 1.53093 * 109.95339 * 70.67786 * 15 5 4 17 17 S 1.81743 * 109.57545 * 239.74022 * 2 1 3 18 18 H 1.08999 * 109.47719 * 180.25594 * 1 2 3 19 19 H 1.09002 * 109.47257 * 300.26194 * 1 2 3 20 20 H 1.08999 * 109.46858 * 60.25745 * 1 2 3 21 21 H 1.08998 * 109.39185 * 62.67870 * 4 2 1 22 22 H 1.09004 * 109.39255 * 302.97944 * 4 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 10 9 7 24 24 H 1.08997 * 109.39032 * 190.82242 * 15 5 4 25 25 H 1.08999 * 109.39478 * 310.62793 * 15 5 4 26 26 H 1.08995 * 109.57964 * 56.78204 * 16 15 5 27 27 H 1.09008 * 109.57594 * 177.16849 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0429 -0.7296 1.2443 5 6 3.5670 -0.6740 1.2895 6 1 3.8926 0.3551 1.1380 7 6 4.0413 -1.1510 2.6380 8 1 3.3256 -1.4803 3.3768 9 6 5.3894 -1.1726 2.9266 10 7 6.2609 -0.7717 2.0271 11 14 5.9777 -1.7711 4.5954 12 1 6.2196 -3.2352 4.5391 13 1 7.2391 -1.0746 4.9546 14 1 4.9424 -1.4795 5.6192 15 6 4.1720 -1.5576 0.2026 16 6 3.9292 -0.9329 -1.1738 17 16 2.1389 -0.8629 -1.4791 18 1 -0.3634 -1.0276 0.0046 19 1 -0.3634 0.5179 0.8876 20 1 -0.3633 0.5098 -0.8923 21 1 1.7195 -1.7701 1.2128 22 1 1.6368 -0.2529 2.1366 23 1 7.2093 -0.7865 2.2302 24 1 5.2444 -1.6558 0.3714 25 1 3.7084 -2.5434 0.2379 26 1 4.3431 0.0751 -1.1956 27 1 4.4069 -1.5425 -1.9409 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260946867.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:26 Heat of formation + Delta-G solvation = -43.017233 kcal Electronic energy + Delta-G solvation = -9873.869837 eV Core-core repulsion = 8142.082329 eV Total energy + Delta-G solvation = -1731.787508 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.25171 -34.80445 -33.32878 -30.10945 -27.10430 -24.80318 -22.60639 -21.23731 -18.39261 -17.63163 -16.62656 -15.67874 -15.14481 -14.77952 -14.50566 -14.31089 -13.56320 -13.35248 -13.11453 -12.81192 -12.59576 -12.37495 -12.03156 -11.86697 -11.50709 -11.15860 -10.84844 -10.60568 -10.30192 -8.59711 -8.09545 -6.26631 0.97378 1.40691 1.41962 1.51571 1.68464 2.41551 3.14523 3.91483 4.09169 4.19149 4.34555 4.40569 4.64170 4.71849 4.88582 4.90536 4.96732 5.14446 5.23037 5.31750 5.42770 5.58076 5.89816 6.06031 6.33580 6.84259 7.41902 8.91982 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064021 B = 0.012406 C = 0.010859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.254686 B = 2256.377794 C = 2577.866722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.042 4.042 3 H 0.076 0.924 4 C -0.097 4.097 5 C 0.037 3.963 6 H -0.006 1.006 7 C -0.533 4.533 8 H 0.054 0.946 9 C 0.013 3.987 10 N -0.915 5.915 11 Si 0.954 3.046 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.268 1.268 15 C -0.105 4.105 16 C -0.063 4.063 17 S -0.300 6.300 18 H 0.063 0.937 19 H 0.083 0.917 20 H 0.069 0.931 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.262 0.738 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.066 0.934 27 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 0.477 -3.243 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 H 0.095 0.905 4 C -0.135 4.135 5 C 0.019 3.981 6 H 0.013 0.987 7 C -0.571 4.571 8 H 0.072 0.928 9 C -0.186 4.186 10 N -0.555 5.555 11 Si 0.780 3.220 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.193 1.193 15 C -0.145 4.145 16 C -0.211 4.211 17 S -0.075 6.075 18 H 0.082 0.918 19 H 0.102 0.898 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.391 0.123 -4.157 8.480 hybrid contribution 1.504 0.210 1.782 2.341 sum -5.887 0.333 -2.375 6.356 Atomic orbital electron populations 1.21597 0.90144 1.03127 1.03252 1.23236 1.00319 0.99884 0.93661 0.90544 1.21744 0.96764 0.99489 0.95545 1.18607 0.91198 0.94207 0.94089 0.98750 1.21557 0.92284 1.43451 0.99806 0.92808 1.25740 0.97113 0.95398 1.00358 1.69983 1.01952 1.48170 1.35370 0.85610 0.77696 0.78392 0.80305 1.20138 1.20944 1.19300 1.21620 1.03491 0.97709 0.91660 1.23397 0.92423 1.03674 1.01574 1.86154 1.09263 1.79340 1.32704 0.91780 0.89811 0.91151 0.92490 0.91905 0.92926 0.90567 0.94293 0.91476 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.27 9.22 71.98 0.66 -2.60 15 2 C -0.04 -1.48 3.11 30.63 0.10 -1.38 15 3 H 0.08 2.72 8.14 -2.39 -0.02 2.70 15 4 C -0.10 -3.94 4.28 30.49 0.13 -3.81 15 5 C 0.04 1.86 1.84 -11.82 -0.02 1.84 15 6 H -0.01 -0.31 8.08 -2.39 -0.02 -0.33 15 7 C -0.53 -29.06 8.50 25.60 0.22 -28.84 15 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 15 9 C 0.01 0.69 5.25 84.66 0.44 1.13 15 10 N -0.92 -52.03 11.28 21.45 0.24 -51.79 15 11 Si 0.95 43.09 29.54 68.60 2.03 45.12 15 12 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 15 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 15 C -0.11 -5.00 4.92 30.49 0.15 -4.85 15 16 C -0.06 -2.51 6.45 72.01 0.46 -2.04 15 17 S -0.30 -10.92 21.70 -56.49 -1.23 -12.15 15 18 H 0.06 1.68 8.14 -2.39 -0.02 1.66 15 19 H 0.08 1.94 8.14 -2.39 -0.02 1.92 15 20 H 0.07 1.68 8.14 -2.39 -0.02 1.66 15 21 H 0.06 2.34 8.06 -2.39 -0.02 2.32 15 22 H 0.06 2.49 8.08 -2.38 -0.02 2.47 15 23 H 0.26 14.16 8.31 -92.70 -0.77 13.39 15 24 H 0.08 4.08 5.79 -2.39 -0.01 4.06 15 25 H 0.04 1.83 8.06 -2.39 -0.02 1.81 15 26 H 0.07 2.75 8.14 -2.39 -0.02 2.74 15 27 H 0.10 3.65 8.14 -2.38 -0.02 3.63 15 Total: -1.00 -57.25 230.37 4.31 -52.94 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: 1.12 Total: 6.44 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 2.14 Total: -40.56 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.24 Total: -51.79 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -10.92 SS G_CDS: -1.23 Total: -12.15 kcal Total: -57.25 4.31 -52.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260946867.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.923 kcal (2) G-P(sol) polarization free energy of solvation -57.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds