Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47259 * 269.99643 * 3 2 1 5 5 H 1.48502 * 109.47392 * 29.99809 * 3 2 1 6 6 H 1.48507 * 109.46942 * 149.99452 * 3 2 1 7 7 C 1.37878 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99798 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00368 * 180.02562 * 7 2 1 10 10 S 1.81405 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.76205 * 102.99827 * 180.02562 * 10 9 7 12 12 N 1.33428 * 126.26617 * 359.97438 * 11 10 9 13 13 N 1.28573 * 109.88338 * 179.97438 * 12 11 10 14 14 N 1.28932 * 109.64881 * 0.02562 * 13 12 11 15 15 H 0.96999 * 126.47146 * 180.02562 * 14 13 12 16 16 N 1.31735 * 126.26070 * 179.97438 * 11 10 9 17 17 H 0.96997 * 120.00024 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.46957 * 60.00809 * 9 7 2 19 19 H 1.09002 * 109.47489 * 300.00309 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 16 4.1162 -2.9043 0.0010 11 6 5.8670 -2.7056 0.0025 12 7 6.5300 -1.5477 0.0029 13 7 7.7965 -1.7690 0.0046 14 7 8.0146 -3.0397 0.0047 15 1 8.8810 -3.4760 0.0061 16 7 6.7610 -3.6732 0.0033 17 1 -0.4850 0.8400 -0.0004 18 1 3.8745 -0.6801 0.8912 19 1 3.8753 -0.6803 -0.8888 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260960004.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = 115.015353 kcal Electronic energy + Delta-G solvation = -8860.132763 eV Core-core repulsion = 6928.117376 eV Total energy + Delta-G solvation = -1932.015388 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.027 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.88502 -33.30112 -33.12474 -32.50654 -29.48289 -24.66747 -23.23478 -22.34997 -19.10397 -17.11317 -16.39059 -16.33976 -14.32008 -14.05593 -13.62971 -12.92962 -12.45231 -12.15344 -11.21458 -10.96327 -10.76024 -10.73469 -10.60944 -10.28462 -9.86944 -9.35864 -8.77403 -7.22829 -6.25534 -4.31189 1.09138 1.47543 2.34490 2.65226 3.09859 3.25115 3.33485 3.37617 4.29091 4.62480 5.06044 5.07120 5.66875 6.57373 6.61211 6.67187 7.28865 8.16874 8.26129 8.71343 9.29037 10.85436 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.071939 B = 0.011241 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.126368 B = 2490.279556 C = 2864.261753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.088 3.912 3 Si 0.875 3.125 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.526 4.526 8 H 0.086 0.914 9 C 0.021 3.979 10 S 0.033 5.967 11 C 0.182 3.818 12 N -0.301 5.301 13 N 0.005 4.995 14 N -0.308 5.308 15 H 0.464 0.536 16 N -0.294 5.294 17 H 0.270 0.730 18 H 0.052 0.948 19 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.605 -3.614 0.033 13.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.118 4.118 3 Si 0.701 3.299 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.565 4.565 8 H 0.104 0.896 9 C -0.127 4.127 10 S 0.259 5.741 11 C -0.208 4.208 12 N -0.182 5.182 13 N 0.008 4.992 14 N -0.155 5.155 15 H 0.318 0.682 16 N -0.142 5.142 17 H 0.080 0.920 18 H 0.071 0.929 19 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.354 -4.203 0.035 13.049 hybrid contribution 1.341 1.452 -0.021 1.977 sum 13.695 -2.751 0.014 13.969 Atomic orbital electron populations 1.69843 1.06192 1.27653 1.48563 1.24759 0.94711 0.98766 0.93557 0.86832 0.80667 0.83209 0.79229 1.19642 1.20720 1.18310 1.20312 0.86160 0.95632 1.54414 0.89568 1.21852 1.00941 0.88419 1.01516 1.85946 0.80730 1.17760 1.89629 1.28397 1.04856 0.88325 0.99206 1.75743 0.95981 1.24397 1.22093 1.78184 1.12324 0.99621 1.09093 1.51061 1.10123 1.03017 1.51313 0.68237 1.78899 0.87782 1.19480 1.28050 0.91952 0.92933 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.96 55.43 0.77 -25.14 13 2 C 0.09 2.44 5.47 -17.82 -0.10 2.35 13 3 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 13 4 H -0.27 -6.31 7.11 56.52 0.40 -5.90 13 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 13 6 H -0.26 -5.98 6.54 56.52 0.37 -5.61 13 7 C -0.53 -14.31 9.68 -34.44 -0.33 -14.65 13 8 H 0.09 2.51 7.96 -52.48 -0.42 2.09 13 9 C 0.02 0.51 4.42 36.00 0.16 0.67 13 10 S 0.03 0.69 22.08 -107.50 -2.37 -1.69 13 11 C 0.18 3.51 8.44 -90.78 -0.77 2.74 13 12 N -0.30 -5.87 11.92 30.16 0.36 -5.51 13 13 N 0.00 0.08 13.43 60.35 0.81 0.89 13 14 N -0.31 -4.05 8.44 60.35 0.51 -3.54 13 15 H 0.46 3.54 8.96 -331.94 -2.98 0.57 13 16 N -0.29 -4.95 12.90 30.17 0.39 -4.56 13 17 H 0.27 7.35 8.31 -40.82 -0.34 7.01 13 18 H 0.05 1.25 7.20 -51.92 -0.37 0.87 13 19 H 0.05 1.12 7.57 -51.92 -0.39 0.73 13 LS Contribution 198.97 15.07 3.00 3.00 Total: -1.00 -30.26 198.97 -5.57 -35.82 By element: Atomic # 1 Polarization: -3.07 SS G_CDS: -3.33 Total: -6.39 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.04 Total: -8.89 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 2.84 Total: -37.87 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Atomic # 16 Polarization: 0.69 SS G_CDS: -2.37 Total: -1.69 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -30.26 -5.57 -35.82 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960004.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.838 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds