Wall clock time and date at job start Mon Mar 30 2020 01:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99966 * 2 1 4 4 H 1.48497 * 109.47259 * 269.99643 * 3 2 1 5 5 H 1.48502 * 109.47392 * 29.99809 * 3 2 1 6 6 H 1.48507 * 109.46942 * 149.99452 * 3 2 1 7 7 C 1.37878 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99798 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00368 * 180.02562 * 7 2 1 10 10 S 1.81405 * 109.47223 * 180.02562 * 9 7 2 11 11 C 1.76205 * 102.99827 * 180.02562 * 10 9 7 12 12 N 1.33428 * 126.26617 * 359.97438 * 11 10 9 13 13 N 1.28573 * 109.88338 * 179.97438 * 12 11 10 14 14 N 1.28932 * 109.64881 * 0.02562 * 13 12 11 15 15 H 0.96999 * 126.47146 * 180.02562 * 14 13 12 16 16 N 1.31735 * 126.26070 * 179.97438 * 11 10 9 17 17 H 0.96997 * 120.00024 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.46957 * 60.00809 * 9 7 2 19 19 H 1.09002 * 109.47489 * 300.00309 * 9 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 16 4.1162 -2.9043 0.0010 11 6 5.8670 -2.7056 0.0025 12 7 6.5300 -1.5477 0.0029 13 7 7.7965 -1.7690 0.0046 14 7 8.0146 -3.0397 0.0047 15 1 8.8810 -3.4760 0.0061 16 7 6.7610 -3.6732 0.0033 17 1 -0.4850 0.8400 -0.0004 18 1 3.8745 -0.6801 0.8912 19 1 3.8753 -0.6803 -0.8888 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260960004.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:19 Heat of formation + Delta-G solvation = 92.502116 kcal Electronic energy + Delta-G solvation = -8861.109011 eV Core-core repulsion = 6928.117376 eV Total energy + Delta-G solvation = -1932.991635 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.027 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -44.23968 -35.23250 -34.60945 -33.88089 -31.49908 -26.10511 -24.72846 -24.21639 -20.41866 -19.12478 -17.98457 -17.68406 -16.30273 -15.53652 -15.34959 -14.77098 -14.37768 -13.50359 -12.81658 -12.76414 -12.42247 -12.24968 -12.08541 -11.94968 -11.78872 -11.22073 -10.86689 -8.83307 -8.37084 -6.48211 -0.21870 -0.04034 0.89432 1.33936 1.39901 1.46124 1.52483 1.54186 2.32280 2.97087 3.24560 3.64795 4.24500 4.66872 4.71224 5.27431 5.70068 6.03281 6.55557 6.90884 7.15977 8.77450 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.071939 B = 0.011241 C = 0.009773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.126368 B = 2490.279556 C = 2864.261753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.248 1.248 7 C -0.534 4.534 8 H 0.053 0.947 9 C 0.023 3.977 10 S 0.039 5.961 11 C 0.170 3.830 12 N -0.334 5.334 13 N 0.013 4.987 14 N -0.266 5.266 15 H 0.489 0.511 16 N -0.289 5.289 17 H 0.275 0.725 18 H 0.053 0.947 19 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.901 -3.330 0.018 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.167 4.167 3 Si 0.762 3.238 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.172 1.172 7 C -0.573 4.573 8 H 0.071 0.929 9 C -0.126 4.126 10 S 0.265 5.735 11 C -0.221 4.221 12 N -0.214 5.214 13 N 0.016 4.984 14 N -0.120 5.120 15 H 0.349 0.651 16 N -0.138 5.138 17 H 0.084 0.916 18 H 0.071 0.929 19 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.686 -3.935 0.019 15.204 hybrid contribution 0.781 1.200 -0.016 1.432 sum 15.467 -2.735 0.003 15.707 Atomic orbital electron populations 1.69966 1.07977 1.28909 1.50038 1.25645 0.95467 1.02571 0.93030 0.85810 0.79643 0.78591 0.79764 1.18683 1.20052 1.17184 1.20487 0.88255 0.94577 1.53968 0.92889 1.21578 0.98599 0.90926 1.01485 1.85774 0.82286 1.14831 1.90595 1.28044 1.04341 0.88986 1.00719 1.75729 0.97008 1.24954 1.23723 1.78127 1.11120 1.00300 1.08859 1.51055 1.10446 1.02288 1.48204 0.65144 1.78849 0.88518 1.19237 1.27200 0.91584 0.92909 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.38 13.96 21.45 0.30 -55.09 13 2 C 0.03 1.94 5.47 84.66 0.46 2.40 13 3 Si 0.94 42.23 27.47 68.60 1.88 44.12 13 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 13 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 13 6 H -0.25 -10.66 6.54 99.48 0.65 -10.00 13 7 C -0.53 -29.51 9.68 25.60 0.25 -29.26 13 8 H 0.05 3.20 7.96 -2.91 -0.02 3.18 13 9 C 0.02 1.09 4.42 71.23 0.32 1.40 13 10 S 0.04 1.60 22.08 -56.49 -1.25 0.35 13 11 C 0.17 6.22 8.44 180.41 1.52 7.74 13 12 N -0.33 -12.29 11.92 -58.49 -0.70 -12.99 13 13 N 0.01 0.37 13.43 37.02 0.50 0.87 13 14 N -0.27 -6.06 8.44 37.02 0.31 -5.75 13 15 H 0.49 5.41 8.96 -340.37 -3.05 2.36 13 16 N -0.29 -8.94 12.90 -58.47 -0.75 -9.70 13 17 H 0.27 15.13 8.31 -92.71 -0.77 14.36 13 18 H 0.05 2.45 7.20 -2.39 -0.02 2.43 13 19 H 0.05 2.34 7.57 -2.39 -0.02 2.32 13 Total: -1.00 -64.20 198.97 1.03 -63.17 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: -1.82 Total: -7.29 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 2.55 Total: -17.71 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -0.34 Total: -82.64 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.88 Total: 44.12 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -1.25 Total: 0.35 kcal Total: -64.20 1.03 -63.17 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260960004.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.677 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds