Wall clock time and date at job start Mon Mar 30 2020 01:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.28929 * 126.45594 * 2 1 4 4 N 1.28572 * 109.66547 * 179.83002 * 3 2 1 5 5 C 1.33483 * 109.88588 * 0.45012 * 4 3 2 6 6 S 1.76202 * 126.28117 * 179.75165 * 5 4 3 7 7 C 1.76192 * 99.99990 * 359.97438 * 6 5 4 8 8 H 1.08008 * 120.00018 * 359.97438 * 7 6 5 9 9 C 1.38720 * 120.00043 * 180.02562 * 7 6 5 10 10 N 1.31629 * 120.00189 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47110 * 60.00153 * 11 9 7 13 13 H 1.48499 * 109.47446 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47321 * 300.00115 * 11 9 7 15 15 N 1.31832 * 107.44113 * 359.73037 * 5 4 3 16 16 H 1.09001 * 109.47060 * 269.68881 * 1 2 3 17 17 H 1.09004 * 109.47073 * 29.68370 * 1 2 3 18 18 H 1.09000 * 109.47212 * 149.68453 * 1 2 3 19 19 H 0.96998 * 120.00232 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2312 1.0370 0.0000 4 7 3.4621 0.6656 0.0036 5 6 3.5342 -0.6673 -0.0037 6 16 5.0088 -1.6317 -0.0086 7 6 6.2146 -0.3470 -0.0019 8 1 5.9021 0.6869 0.0030 9 6 7.5652 -0.6634 -0.0039 10 7 7.9461 -1.9233 -0.0104 11 14 8.8436 0.6986 0.0025 12 1 8.6724 1.5325 1.2193 13 1 10.2033 0.1015 -0.0004 14 1 8.6716 1.5447 -1.2057 15 7 2.2996 -1.1298 -0.0062 16 1 -0.3633 -0.0056 1.0277 17 1 -0.3633 0.8928 -0.5089 18 1 -0.3634 -0.8871 -0.5187 19 1 8.8905 -2.1446 -0.0122 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260967485.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:41 Heat of formation + Delta-G solvation = 117.293948 kcal Electronic energy + Delta-G solvation = -8925.867268 eV Core-core repulsion = 6993.950688 eV Total energy + Delta-G solvation = -1931.916580 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.027 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -42.11119 -33.96495 -32.67157 -31.78078 -28.03629 -25.68890 -22.76616 -22.06957 -17.97955 -17.05573 -16.17524 -15.15319 -14.93134 -13.43975 -13.29639 -13.19312 -12.83217 -11.30699 -11.16399 -11.12496 -11.09179 -10.41198 -10.23198 -9.99209 -9.69558 -9.14760 -8.87115 -6.91002 -6.45034 -4.20362 1.70520 2.27775 3.02764 3.05278 3.24466 3.25372 3.31183 4.01893 4.63205 4.98140 5.01759 5.09116 5.31746 5.72980 5.90907 6.46502 6.86193 7.57203 8.34731 9.00991 9.06551 10.62822 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.088487 B = 0.010995 C = 0.009832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 316.354515 B = 2546.070698 C = 2847.280996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.232 5.232 3 N -0.022 5.022 4 N -0.300 5.300 5 C 0.168 3.832 6 S 0.183 5.817 7 C -0.549 4.549 8 H 0.103 0.897 9 C 0.078 3.922 10 N -0.876 5.876 11 Si 0.932 3.068 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.269 1.269 15 N -0.332 5.332 16 H 0.085 0.915 17 H 0.097 0.903 18 H 0.098 0.902 19 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.471 2.212 -0.057 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.145 5.145 3 N -0.018 5.018 4 N -0.180 5.180 5 C -0.218 4.218 6 S 0.410 5.590 7 C -0.698 4.698 8 H 0.121 0.879 9 C -0.132 4.132 10 N -0.510 5.510 11 Si 0.758 3.242 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.195 1.195 15 N -0.181 5.181 16 H 0.103 0.897 17 H 0.116 0.884 18 H 0.117 0.883 19 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.602 1.375 -0.061 9.700 hybrid contribution 0.650 1.630 0.024 1.755 sum -8.952 3.005 -0.037 9.443 Atomic orbital electron populations 1.21953 0.71632 1.05210 1.04258 1.53355 1.09165 1.01587 1.50399 1.78144 0.97345 1.15701 1.10579 1.75626 1.08271 1.11582 1.22564 1.29014 1.00434 0.93577 0.98771 1.83837 0.84418 1.05518 1.85212 1.23260 0.91630 0.95629 1.59240 0.87934 1.25064 0.97818 0.96903 0.93374 1.69932 1.17843 1.16881 1.46393 0.85982 0.78389 0.80408 0.79450 1.19455 1.20771 1.19451 1.78905 0.99675 1.07411 1.32116 0.89691 0.88443 0.88323 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.20 11.78 59.85 0.70 1.90 13 2 N -0.23 -4.29 4.75 -16.63 -0.08 -4.37 13 3 N -0.02 -0.47 13.24 60.35 0.80 0.33 13 4 N -0.30 -7.41 11.11 30.19 0.34 -7.08 13 5 C 0.17 4.15 8.36 -90.65 -0.76 3.39 13 6 S 0.18 4.79 21.89 -107.50 -2.35 2.43 13 7 C -0.55 -15.42 9.37 30.91 0.29 -15.13 13 8 H 0.10 2.91 6.91 -52.48 -0.36 2.55 13 9 C 0.08 2.13 5.49 -17.46 -0.10 2.04 13 10 N -0.88 -24.59 13.22 55.49 0.73 -23.85 13 11 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 13 12 H -0.27 -6.04 7.11 56.52 0.40 -5.64 13 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 13 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 13 15 N -0.33 -7.33 12.79 30.19 0.39 -6.94 13 16 H 0.08 0.73 8.14 -51.93 -0.42 0.31 13 17 H 0.10 0.79 8.14 -51.93 -0.42 0.37 13 18 H 0.10 0.88 8.14 -51.93 -0.42 0.45 13 19 H 0.28 7.19 8.31 -40.82 -0.34 6.85 13 LS Contribution 202.52 15.07 3.05 3.05 Total: -1.00 -31.86 202.52 -2.77 -34.64 By element: Atomic # 1 Polarization: -5.76 SS G_CDS: -0.77 Total: -6.52 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 0.14 Total: -7.80 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: 2.18 Total: -41.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 4.79 SS G_CDS: -2.35 Total: 2.43 kcal Total LS contribution 3.05 Total: 3.05 kcal Total: -31.86 -2.77 -34.64 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967485.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.933 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds