Wall clock time and date at job start Mon Mar 30 2020 01:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.34607 * 126.57840 * 274.68699 * 10 9 7 12 12 N 1.34201 * 108.04634 * 179.83885 * 11 10 9 13 13 C 1.30622 * 109.25776 * 0.43048 * 12 11 10 14 14 Cl 1.73600 * 125.66382 * 179.76702 * 13 12 11 15 15 N 1.35101 * 108.66931 * 359.74034 * 13 12 11 16 16 H 0.97007 * 126.40597 * 179.97438 * 15 13 12 17 17 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 18 18 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 19 19 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 20 20 H 1.07999 * 125.97484 * 359.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 6 2.8145 -4.1946 -1.0929 12 7 3.6192 -5.1830 -0.6727 13 6 3.5484 -5.2724 0.6285 14 17 4.4117 -6.4121 1.6132 15 7 2.6923 -4.3303 1.0808 16 1 2.4497 -4.1694 2.0062 17 1 -0.4849 0.8401 0.0041 18 1 0.6280 -2.5591 0.8866 19 1 0.6206 -2.5548 -0.8933 20 1 2.6639 -3.8918 -2.1185 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260972982.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:23 Heat of formation + Delta-G solvation = 18.400947 kcal Electronic energy + Delta-G solvation = -8964.423659 eV Core-core repulsion = 6993.882299 eV Total energy + Delta-G solvation = -1970.541360 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.97995 -37.95419 -35.50032 -33.65912 -32.25094 -28.40453 -25.12333 -22.52481 -21.89034 -19.10925 -18.51354 -16.56528 -16.28219 -15.94940 -14.73964 -14.45773 -14.23151 -13.54041 -12.99950 -12.71889 -12.67935 -12.49864 -12.00741 -11.57951 -11.12502 -11.08232 -10.61438 -9.21452 -8.22661 -6.36010 0.31032 0.98571 1.40964 1.43929 1.55395 2.00146 2.37696 2.44274 3.09579 4.00774 4.40688 4.59746 4.73356 5.26984 5.57585 5.63141 5.69979 6.06513 6.29492 6.74183 6.84617 7.33497 8.85692 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.076646 B = 0.009136 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.229027 B = 3063.981603 C = 3152.909800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.013 3.987 3 Si 0.963 3.037 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.053 0.947 9 C 0.092 3.908 10 C 0.044 3.956 11 C -0.051 4.051 12 N -0.489 5.489 13 C 0.219 3.781 14 Cl 0.048 6.952 15 N -0.546 5.546 16 H 0.432 0.568 17 H 0.267 0.733 18 H 0.018 0.982 19 H 0.035 0.965 20 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -7.265 3.727 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.054 3.946 10 C -0.073 4.073 11 C -0.197 4.197 12 N -0.213 5.213 13 C -0.069 4.069 14 Cl 0.075 6.925 15 N -0.156 5.156 16 H 0.272 0.728 17 H 0.076 0.924 18 H 0.036 0.964 19 H 0.053 0.947 20 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.596 -7.780 3.266 10.124 hybrid contribution -0.306 1.306 1.029 1.691 sum 5.290 -6.473 4.295 9.398 Atomic orbital electron populations 1.70044 1.07388 1.28109 1.50724 1.25790 0.95700 1.02743 0.94407 0.85420 0.78780 0.79035 0.77940 1.19393 1.20207 1.20251 1.21329 0.93089 0.90969 1.51701 0.92864 1.17650 0.91299 0.87754 0.97917 1.22033 1.01849 0.97255 0.86191 1.22201 1.00408 0.97216 0.99902 1.70062 1.22698 1.20997 1.07511 1.23076 0.99039 0.95094 0.89665 1.98379 1.73182 1.54933 1.66019 1.43009 1.35066 1.26507 1.10977 0.72769 0.92359 0.96393 0.94709 0.79997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.98 13.29 21.45 0.28 -51.70 14 2 C 0.01 0.69 5.46 84.66 0.46 1.16 14 3 Si 0.96 42.26 29.54 68.60 2.03 44.28 14 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 14 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 14 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 14 7 C -0.53 -28.35 9.09 25.60 0.23 -28.12 14 8 H 0.05 2.85 7.74 -2.91 -0.02 2.83 14 9 C 0.09 4.47 5.53 29.10 0.16 4.63 14 10 C 0.04 1.82 6.43 40.91 0.26 2.08 14 11 C -0.05 -2.10 11.79 83.50 0.98 -1.11 14 12 N -0.49 -19.34 11.26 -191.04 -2.15 -21.49 14 13 C 0.22 7.62 8.85 180.21 1.60 9.22 14 14 Cl 0.05 1.25 29.33 -2.72 -0.08 1.17 14 15 N -0.55 -19.29 6.16 -177.38 -1.09 -20.39 14 16 H 0.43 12.69 8.96 -92.70 -0.83 11.86 14 17 H 0.27 14.15 8.31 -92.71 -0.77 13.38 14 18 H 0.02 0.89 8.14 -2.38 -0.02 0.87 14 19 H 0.03 1.78 8.14 -2.39 -0.02 1.76 14 20 H 0.18 6.86 8.06 -2.91 -0.02 6.83 14 Total: -1.00 -59.02 207.41 3.12 -55.90 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: 0.43 Total: 4.37 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 3.70 Total: -12.15 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -2.96 Total: -93.57 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Atomic # 17 Polarization: 1.25 SS G_CDS: -0.08 Total: 1.17 kcal Total: -59.02 3.12 -55.90 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260972982.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.298 kcal (2) G-P(sol) polarization free energy of solvation -59.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds