Wall clock time and date at job start Mon Mar 30 2020 02:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 112.99752 * 2 1 4 4 C 1.52997 * 109.47127 * 50.33310 * 3 2 1 5 5 O 1.42895 * 109.47269 * 179.97438 * 4 3 2 6 6 C 1.34923 * 117.00188 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00224 * 0.02562 * 6 5 4 8 8 C 1.38638 * 119.99935 * 179.97438 * 6 5 4 9 9 N 1.31578 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99936 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47359 * 90.00118 * 10 8 6 12 12 H 1.48504 * 109.46981 * 210.00582 * 10 8 6 13 13 H 1.48498 * 109.47340 * 330.00111 * 10 8 6 14 14 C 1.54037 * 113.81551 * 131.82290 * 2 1 3 15 15 O 1.44452 * 85.42210 * 91.81262 * 14 2 1 16 16 C 1.44174 * 93.37983 * 24.08784 * 15 14 2 17 17 H 1.09002 * 109.47008 * 60.00042 * 1 2 3 18 18 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 19 19 H 1.08997 * 109.47327 * 300.00482 * 1 2 3 20 20 H 1.09001 * 109.47002 * 170.32884 * 3 2 1 21 21 H 1.08993 * 109.46955 * 290.33321 * 3 2 1 22 22 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 23 23 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 24 24 H 0.97001 * 120.00204 * 179.97438 * 9 8 6 25 25 H 1.08992 * 113.86538 * 205.91789 * 14 2 1 26 26 H 1.09002 * 113.86428 * 337.62359 * 14 2 1 27 27 H 1.08998 * 113.86437 * 221.76877 * 16 15 14 28 28 H 1.09002 * 113.98294 * 90.07311 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4085 0.0000 4 6 1.4794 2.2377 1.1104 5 8 2.0381 3.5529 1.1108 6 6 1.5707 4.4167 2.0359 7 1 0.8084 4.1012 2.7329 8 6 2.0698 5.7089 2.0924 9 7 2.9988 6.0931 1.2436 10 14 1.4232 6.9046 3.3737 11 1 2.2432 6.7996 4.6073 12 1 1.5023 8.2893 2.8430 13 1 0.0099 6.5756 3.6893 14 6 2.1520 -0.9397 1.0502 15 8 2.1471 -1.9296 -0.0018 16 6 2.1520 -0.9397 -1.0500 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3634 -1.0276 -0.0005 19 1 -0.3634 0.5139 0.8899 20 1 3.2023 1.3471 0.1726 21 1 1.9410 1.8824 -0.9636 22 1 0.4049 2.2990 0.9378 23 1 1.6661 1.7637 2.0740 24 1 3.3478 6.9973 1.2829 25 1 3.1502 -0.6427 1.3715 26 1 1.4868 -1.1741 1.8812 27 1 1.4869 -1.1741 -1.8811 28 1 3.1494 -0.6414 -1.3730 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260994479.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:23 Heat of formation + Delta-G solvation = -82.155127 kcal Electronic energy + Delta-G solvation = -11458.664985 eV Core-core repulsion = 9282.427459 eV Total energy + Delta-G solvation = -2176.237525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 186.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.64263 -38.36114 -34.95861 -33.64531 -29.72410 -27.59446 -27.38141 -26.45580 -23.40597 -19.93411 -19.42688 -17.56122 -17.00656 -16.82156 -16.52742 -16.02557 -15.65141 -14.95953 -14.41843 -13.74094 -13.59420 -13.25756 -13.01259 -12.92033 -12.66528 -12.25793 -12.10762 -11.56245 -11.37411 -11.18526 -11.12234 -10.60246 -10.15088 -8.19054 -5.89214 1.39692 1.46433 1.55677 2.32654 2.73851 3.14111 3.15473 3.60808 3.95814 4.09527 4.30794 4.35459 4.42070 4.58415 4.60236 4.73978 4.87627 4.92375 4.95644 5.09978 5.10966 5.16542 5.19028 5.31352 5.37939 6.20075 7.23997 8.05403 9.06176 Molecular weight = 186.10amu Principal moments of inertia in cm(-1) A = 0.088919 B = 0.007841 C = 0.007646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 314.816777 B = 3570.212413 C = 3661.346567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C -0.097 4.097 4 C 0.069 3.931 5 O -0.342 6.342 6 C -0.380 4.380 7 H 0.072 0.928 8 C -0.043 4.043 9 N -0.940 5.940 10 Si 1.007 2.993 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.258 1.258 14 C 0.039 3.961 15 O -0.400 6.400 16 C 0.046 3.954 17 H 0.067 0.933 18 H 0.073 0.927 19 H 0.059 0.941 20 H 0.061 0.939 21 H 0.064 0.936 22 H 0.033 0.967 23 H 0.025 0.975 24 H 0.261 0.739 25 H 0.083 0.917 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 -11.356 -1.296 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 C -0.134 4.134 4 C -0.007 4.007 5 O -0.259 6.259 6 C -0.459 4.459 7 H 0.090 0.910 8 C -0.236 4.236 9 N -0.585 5.585 10 Si 0.828 3.172 11 H -0.195 1.195 12 H -0.203 1.203 13 H -0.182 1.182 14 C -0.037 4.037 15 O -0.319 6.319 16 C -0.030 4.030 17 H 0.086 0.914 18 H 0.092 0.908 19 H 0.078 0.922 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.138 -11.483 -1.473 12.294 hybrid contribution -0.150 0.812 0.599 1.020 sum -4.288 -10.671 -0.874 11.533 Atomic orbital electron populations 1.21599 0.91349 1.02719 1.02811 1.23592 0.98160 0.93535 0.96895 1.21415 0.99762 0.93806 0.98455 1.22391 0.96307 0.84672 0.97371 1.85544 1.64184 1.20341 1.55797 1.21344 1.20624 0.93085 1.10862 0.91004 1.26264 0.97560 0.98768 1.00990 1.70193 1.30417 1.18883 1.39037 0.84745 0.78714 0.76749 0.76946 1.19497 1.20308 1.18219 1.24265 1.01020 0.86008 0.92430 1.89634 1.95915 1.28518 1.17832 1.24200 1.01284 0.85315 0.92213 0.91373 0.90769 0.92227 0.92033 0.91725 0.94908 0.95686 0.93006 0.89911 0.88116 0.87302 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.47 71.98 0.61 -2.50 15 2 C -0.12 -3.28 1.05 -51.48 -0.05 -3.33 15 3 C -0.10 -3.41 5.13 30.60 0.16 -3.25 15 4 C 0.07 3.04 5.45 71.98 0.39 3.44 15 5 O -0.34 -20.33 9.78 -81.92 -0.80 -21.13 15 6 C -0.38 -22.87 9.89 67.92 0.67 -22.20 15 7 H 0.07 4.00 7.77 -2.91 -0.02 3.98 15 8 C -0.04 -2.56 5.49 84.83 0.47 -2.09 15 9 N -0.94 -60.58 13.67 21.61 0.30 -60.28 15 10 Si 1.01 45.24 29.55 68.60 2.03 47.27 15 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 15 12 H -0.28 -12.13 7.11 99.48 0.71 -11.42 15 13 H -0.26 -10.77 7.11 99.48 0.71 -10.06 15 14 C 0.04 1.02 8.36 72.30 0.60 1.63 15 15 O -0.40 -10.98 12.38 -148.98 -1.84 -12.82 15 16 C 0.05 1.09 8.37 72.29 0.60 1.70 15 17 H 0.07 1.58 8.14 -2.39 -0.02 1.56 15 18 H 0.07 1.58 8.09 -2.39 -0.02 1.56 15 19 H 0.06 1.54 6.68 -2.39 -0.02 1.52 15 20 H 0.06 2.23 7.98 -2.39 -0.02 2.21 15 21 H 0.06 2.33 8.14 -2.39 -0.02 2.31 15 22 H 0.03 1.38 6.61 -2.39 -0.02 1.36 15 23 H 0.03 1.06 8.14 -2.38 -0.02 1.04 15 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 15 25 H 0.08 2.15 7.99 -2.39 -0.02 2.13 15 26 H 0.10 2.35 8.10 -2.39 -0.02 2.33 15 27 H 0.11 2.11 8.10 -2.39 -0.02 2.09 15 28 H 0.09 1.95 8.10 -2.39 -0.02 1.94 15 Total: -1.00 -71.31 241.07 4.25 -67.06 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: 1.12 Total: 6.52 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 3.45 Total: -26.62 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: 0.30 Total: -60.28 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -2.65 Total: -33.95 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.31 4.25 -67.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260994479.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.095 kcal (2) G-P(sol) polarization free energy of solvation -71.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds