Wall clock time and date at job start Mon Mar 30 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.38666 * 2 1 4 4 H 1.07997 * 119.99786 * 239.80003 * 3 2 1 5 5 C 1.37879 * 120.00108 * 59.80377 * 3 2 1 6 6 N 1.31518 * 119.99909 * 359.97438 * 5 3 2 7 7 Si 1.86803 * 119.99911 * 179.97438 * 5 3 2 8 8 H 1.48505 * 109.46840 * 89.99813 * 7 5 3 9 9 H 1.48500 * 109.46965 * 210.00161 * 7 5 3 10 10 H 1.48496 * 109.47027 * 330.00026 * 7 5 3 11 11 C 1.52575 * 109.38896 * 240.29557 * 2 1 3 12 12 C 1.52580 * 110.73002 * 310.52693 * 11 2 1 13 13 C 1.53099 * 109.95400 * 289.32525 * 12 11 2 14 14 S 1.82094 * 108.89552 * 63.01234 * 13 12 11 15 15 C 1.53098 * 109.39103 * 119.80075 * 2 1 3 16 16 H 1.08997 * 109.46878 * 300.19389 * 1 2 3 17 17 H 1.08993 * 109.47119 * 60.19718 * 1 2 3 18 18 H 1.08999 * 109.47034 * 180.20089 * 1 2 3 19 19 H 0.96998 * 119.99399 * 179.97438 * 6 5 3 20 20 H 1.09001 * 109.22946 * 70.85053 * 11 2 1 21 21 H 1.09003 * 109.22494 * 190.24680 * 11 2 1 22 22 H 1.08996 * 109.39045 * 49.46799 * 12 11 2 23 23 H 1.08997 * 109.39314 * 169.27656 * 12 11 2 24 24 H 1.09000 * 109.57606 * 182.82905 * 13 12 11 25 25 H 1.08999 * 109.57794 * 303.08695 * 13 12 11 26 26 H 1.09002 * 109.57593 * 176.93267 * 15 2 1 27 27 H 1.09001 * 109.57569 * 297.19171 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0303 1.4215 0.0000 4 1 2.6533 1.7747 -0.8084 5 6 1.6926 2.2712 1.0320 6 7 0.9335 1.8412 2.0162 7 14 2.3133 4.0331 1.0323 8 1 1.3366 4.9021 0.3279 9 1 2.4729 4.5014 2.4325 10 1 3.6238 4.0964 0.3368 11 6 2.0365 -0.7132 -1.2501 12 6 1.3411 -2.0603 -1.4225 13 6 1.8255 -3.0394 -0.3498 14 16 1.3526 -2.4005 1.2885 15 6 2.0383 -0.7177 1.2532 16 1 -0.3633 0.5168 0.8882 17 1 -0.3633 0.5107 -0.8917 18 1 -0.3633 -1.0276 0.0036 19 1 0.6963 2.4389 2.7424 20 1 1.8373 -0.0920 -2.1234 21 1 3.1111 -0.8734 -1.1614 22 1 0.2635 -1.9258 -1.3295 23 1 1.5719 -2.4631 -2.4087 24 1 1.3631 -4.0135 -0.5089 25 1 2.9097 -3.1361 -0.4064 26 1 3.1270 -0.7674 1.2293 27 1 1.7169 -0.1737 2.1413 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110770.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:21 Heat of formation + Delta-G solvation = -31.772919 kcal Electronic energy + Delta-G solvation = -10179.129387 eV Core-core repulsion = 8447.829469 eV Total energy + Delta-G solvation = -1731.299918 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.86287 -34.80832 -32.14577 -28.02720 -27.56110 -27.01089 -23.09581 -20.09169 -18.18913 -17.37296 -16.46478 -15.64328 -15.22057 -14.65306 -14.57248 -13.89290 -13.71994 -13.20937 -12.92563 -12.58987 -12.27381 -12.09870 -12.00382 -11.73689 -11.58620 -11.25375 -10.75046 -10.43621 -10.13295 -8.38347 -8.02898 -6.21541 1.18097 1.41575 1.43996 1.52202 1.93088 2.44073 3.19804 4.00463 4.13461 4.36499 4.52711 4.63669 4.77293 4.80281 4.97886 5.09596 5.24582 5.28306 5.36880 5.47371 5.57314 5.66863 5.99420 6.26182 6.40472 6.85029 7.46731 8.94337 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.064995 B = 0.014460 C = 0.013262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.697072 B = 1935.894546 C = 2110.807009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.060 3.940 3 C -0.523 4.523 4 H 0.052 0.948 5 C 0.022 3.978 6 N -0.904 5.904 7 Si 0.949 3.051 8 H -0.278 1.278 9 H -0.285 1.285 10 H -0.271 1.271 11 C -0.109 4.109 12 C -0.120 4.120 13 C -0.060 4.060 14 S -0.348 6.348 15 C -0.036 4.036 16 H 0.051 0.949 17 H 0.018 0.982 18 H 0.048 0.952 19 H 0.260 0.740 20 H 0.054 0.946 21 H 0.044 0.956 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -5.854 -4.728 7.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.058 3.942 3 C -0.563 4.563 4 H 0.070 0.930 5 C -0.178 4.178 6 N -0.543 5.543 7 Si 0.775 3.225 8 H -0.204 1.204 9 H -0.211 1.211 10 H -0.196 1.196 11 C -0.147 4.147 12 C -0.158 4.158 13 C -0.208 4.208 14 S -0.121 6.121 15 C -0.184 4.184 16 H 0.070 0.930 17 H 0.037 0.963 18 H 0.067 0.933 19 H 0.070 0.930 20 H 0.073 0.927 21 H 0.063 0.937 22 H 0.089 0.911 23 H 0.109 0.891 24 H 0.136 0.864 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.771 -6.348 -3.715 7.396 hybrid contribution 0.950 1.828 -0.516 2.124 sum 1.721 -4.521 -4.231 6.426 Atomic orbital electron populations 1.21826 0.97397 0.98973 1.00001 1.18217 0.93356 0.92919 0.89738 1.21473 1.31373 0.96354 1.07107 0.93022 1.25630 0.95051 1.01824 0.95301 1.69914 1.36946 1.36406 1.11044 0.85697 0.78779 0.80920 0.77079 1.20417 1.21120 1.19560 1.21508 0.98748 0.95835 0.98583 1.21768 1.01344 0.94264 0.98474 1.23428 1.03814 1.01560 0.92000 1.86467 1.79262 1.19998 1.26330 1.23634 0.98906 0.89732 1.06087 0.93029 0.96273 0.93340 0.93026 0.92712 0.93696 0.91105 0.89149 0.86441 0.89926 0.93739 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 7.32 71.98 0.53 -5.42 15 2 C 0.06 2.83 0.49 -53.04 -0.03 2.80 15 3 C -0.52 -27.68 7.96 25.60 0.20 -27.48 15 4 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 5 C 0.02 1.15 5.14 84.65 0.44 1.58 15 6 N -0.90 -50.07 9.31 21.45 0.20 -49.87 15 7 Si 0.95 42.65 29.54 68.60 2.03 44.67 15 8 H -0.28 -12.34 7.11 99.48 0.71 -11.63 15 9 H -0.29 -12.71 7.11 99.48 0.71 -12.00 15 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 11 C -0.11 -4.30 4.50 30.31 0.14 -4.16 15 12 C -0.12 -3.82 5.56 30.49 0.17 -3.65 15 13 C -0.06 -1.87 6.46 72.02 0.47 -1.40 15 14 S -0.35 -14.09 20.81 -56.49 -1.18 -15.26 15 15 C -0.04 -1.69 5.07 72.01 0.37 -1.33 15 16 H 0.05 2.78 6.04 -2.39 -0.01 2.76 15 17 H 0.02 0.87 8.14 -2.39 -0.02 0.85 15 18 H 0.05 2.13 4.95 -2.39 -0.01 2.12 15 19 H 0.26 13.89 8.31 -92.71 -0.77 13.12 15 20 H 0.05 2.14 8.08 -2.39 -0.02 2.13 15 21 H 0.04 1.74 8.08 -2.39 -0.02 1.72 15 22 H 0.07 2.39 5.80 -2.39 -0.01 2.38 15 23 H 0.09 2.28 8.14 -2.39 -0.02 2.26 15 24 H 0.12 2.97 8.14 -2.39 -0.02 2.95 15 25 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 26 H 0.04 2.10 8.14 -2.39 -0.02 2.08 15 27 H 0.10 5.34 6.00 -2.39 -0.01 5.32 15 Total: -1.00 -56.03 219.18 4.46 -51.56 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.14 Total: 7.95 kcal Atomic # 6 Polarization: -41.33 SS G_CDS: 2.28 Total: -39.06 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.20 Total: -49.87 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -14.09 SS G_CDS: -1.18 Total: -15.26 kcal Total: -56.03 4.46 -51.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110770.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.792 kcal (2) G-P(sol) polarization free energy of solvation -56.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds