Wall clock time and date at job start Mon Mar 30 2020 01:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.38795 * 2 1 4 4 H 1.08001 * 119.99930 * 263.87769 * 3 2 1 5 5 C 1.37875 * 120.00093 * 83.60794 * 3 2 1 6 6 N 1.31517 * 120.00307 * 167.68883 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 347.68566 * 5 3 2 8 8 H 1.48503 * 109.47189 * 96.15207 * 7 5 3 9 9 H 1.48500 * 109.47248 * 216.14647 * 7 5 3 10 10 H 1.48497 * 109.47257 * 336.14746 * 7 5 3 11 11 C 1.52583 * 109.38839 * 119.79889 * 2 1 3 12 12 C 1.52625 * 110.70187 * 49.27793 * 11 2 1 13 13 C 1.53104 * 109.87503 * 70.81799 * 12 11 2 14 14 S 1.81743 * 108.83874 * 296.93821 * 13 12 11 15 15 C 1.53096 * 109.38945 * 240.19522 * 2 1 3 16 16 H 1.08996 * 109.47217 * 60.00279 * 1 2 3 17 17 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 18 18 H 1.08998 * 109.47092 * 299.99622 * 1 2 3 19 19 H 0.97002 * 120.00373 * 179.97438 * 6 5 3 20 20 H 1.09003 * 109.22441 * 169.69440 * 11 2 1 21 21 H 1.08995 * 109.23171 * 289.05505 * 11 2 1 22 22 H 1.08997 * 109.46455 * 310.67425 * 12 11 2 23 23 H 1.09007 * 109.32115 * 190.86972 * 12 11 2 24 24 H 1.08993 * 109.57779 * 177.12852 * 13 12 11 25 25 H 1.08998 * 109.67905 * 56.80609 * 13 12 11 26 26 H 1.08995 * 109.57590 * 62.78409 * 15 2 1 27 27 H 1.09002 * 109.57268 * 183.16623 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0303 1.4215 0.0000 4 1 2.3036 1.8978 -0.9300 5 6 2.1337 2.1159 1.1866 6 7 2.7891 3.2555 1.2267 7 14 1.3430 1.4382 2.7374 8 1 2.3571 0.6916 3.5245 9 1 0.8113 2.5597 3.5527 10 1 0.2321 0.5246 2.3680 11 6 2.0366 -0.7153 1.2490 12 6 1.3371 -2.0608 1.4212 13 6 1.8209 -3.0401 0.3484 14 16 1.3501 -2.3996 -1.2860 15 6 2.0383 -0.7178 -1.2531 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 2.8616 3.7442 2.0614 20 1 3.1109 -0.8762 1.1596 21 1 1.8388 -0.0949 2.1231 22 1 0.2597 -1.9247 1.3275 23 1 1.5666 -2.4629 2.4081 24 1 1.3571 -4.0136 0.5066 25 1 2.9050 -3.1388 0.4035 26 1 1.7165 -0.1741 -2.1413 27 1 3.1268 -0.7690 -1.2284 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261110773.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:23 Heat of formation + Delta-G solvation = 9.730244 kcal Electronic energy + Delta-G solvation = -10304.514596 eV Core-core repulsion = 8575.014390 eV Total energy + Delta-G solvation = -1729.500206 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -37.70960 -32.73122 -31.26466 -27.07817 -26.21096 -25.03091 -21.42305 -19.04772 -16.62959 -15.91200 -15.36862 -14.03769 -13.75929 -13.33096 -13.03727 -12.69897 -12.19981 -12.12026 -11.70431 -11.04168 -10.86026 -10.49961 -10.15409 -10.11550 -9.84677 -9.32181 -8.92599 -8.56724 -8.41911 -7.06917 -6.16145 -4.13492 2.38540 3.14765 3.20904 3.32000 3.38899 4.32345 5.12674 5.19868 5.28932 5.58892 5.81310 5.84995 5.99315 6.05671 6.27650 6.35562 6.48660 6.60325 6.63058 6.84982 6.98994 7.18558 7.49269 7.69603 8.42560 8.86744 9.47012 10.96330 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056618 B = 0.017965 C = 0.015644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.426021 B = 1558.211465 C = 1789.355938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.043 3.957 3 C -0.510 4.510 4 H 0.076 0.924 5 C 0.071 3.929 6 N -0.893 5.893 7 Si 0.893 3.107 8 H -0.291 1.291 9 H -0.307 1.307 10 H -0.248 1.248 11 C -0.121 4.121 12 C -0.131 4.131 13 C -0.068 4.068 14 S -0.313 6.313 15 C -0.039 4.039 16 H 0.044 0.956 17 H 0.046 0.954 18 H 0.052 0.948 19 H 0.264 0.736 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 -9.815 0.300 10.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.040 3.960 3 C -0.549 4.549 4 H 0.094 0.906 5 C -0.131 4.131 6 N -0.530 5.530 7 Si 0.728 3.272 8 H -0.220 1.220 9 H -0.237 1.237 10 H -0.174 1.174 11 C -0.158 4.158 12 C -0.170 4.170 13 C -0.216 4.216 14 S -0.086 6.086 15 C -0.187 4.187 16 H 0.063 0.937 17 H 0.065 0.935 18 H 0.071 0.929 19 H 0.074 0.926 20 H 0.078 0.922 21 H 0.066 0.934 22 H 0.099 0.901 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.095 0.905 26 H 0.113 0.887 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.076 -10.204 -0.457 10.667 hybrid contribution 0.454 0.414 1.877 1.975 sum -2.622 -9.790 1.420 10.234 Atomic orbital electron populations 1.22465 0.97546 0.99782 1.01167 1.18520 0.93089 0.95294 0.89069 1.20809 1.44203 0.94695 0.95243 0.90631 1.25070 0.94241 0.94979 0.98859 1.69933 1.39629 1.16141 1.27297 0.86882 0.80654 0.76777 0.82865 1.21987 1.23663 1.17448 1.21968 0.99937 0.94214 0.99642 1.21886 1.02292 0.95701 0.97094 1.23268 1.03351 1.00754 0.94271 1.86354 1.78708 1.20127 1.23370 1.23666 1.01747 0.89971 1.03294 0.93723 0.93488 0.92888 0.92580 0.92179 0.93387 0.90118 0.92249 0.88951 0.90496 0.88733 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 7.26 37.16 0.27 -2.98 15 2 C 0.04 0.96 0.49 -155.82 -0.08 0.88 15 3 C -0.51 -13.84 8.61 -34.44 -0.30 -14.13 15 4 H 0.08 2.22 8.05 -52.49 -0.42 1.80 15 5 C 0.07 1.99 5.35 -17.82 -0.10 1.90 15 6 N -0.89 -26.87 13.96 55.43 0.77 -26.10 15 7 Si 0.89 21.71 23.35 -169.99 -3.97 17.74 15 8 H -0.29 -6.98 6.98 56.52 0.39 -6.58 15 9 H -0.31 -7.63 7.11 56.52 0.40 -7.23 15 10 H -0.25 -5.58 4.54 56.52 0.26 -5.32 15 11 C -0.12 -2.58 3.63 -27.14 -0.10 -2.67 15 12 C -0.13 -2.29 5.57 -26.87 -0.15 -2.44 15 13 C -0.07 -1.07 6.45 37.21 0.24 -0.83 15 14 S -0.31 -5.59 20.78 -107.50 -2.23 -7.82 15 15 C -0.04 -0.79 5.24 37.21 0.20 -0.59 15 16 H 0.04 0.94 8.14 -51.93 -0.42 0.51 15 17 H 0.05 0.91 4.93 -51.93 -0.26 0.66 15 18 H 0.05 1.17 4.78 -51.93 -0.25 0.92 15 19 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 20 H 0.06 1.28 8.08 -51.93 -0.42 0.86 15 21 H 0.05 1.10 1.10 -51.93 -0.06 1.05 15 22 H 0.08 1.43 5.78 -51.93 -0.30 1.13 15 23 H 0.06 0.92 8.14 -51.92 -0.42 0.50 15 24 H 0.09 1.24 8.14 -51.93 -0.42 0.82 15 25 H 0.08 1.16 8.14 -51.93 -0.42 0.73 15 26 H 0.09 1.90 8.14 -51.93 -0.42 1.48 15 27 H 0.07 1.52 8.14 -51.93 -0.42 1.09 15 LS Contribution 209.19 15.07 3.15 3.15 Total: -1.00 -28.52 209.19 -5.81 -34.34 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -3.53 Total: -0.44 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -0.01 Total: -20.86 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.77 Total: -26.10 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -3.97 Total: 17.74 kcal Atomic # 16 Polarization: -5.59 SS G_CDS: -2.23 Total: -7.82 kcal Total LS contribution 3.15 Total: 3.15 kcal Total: -28.52 -5.81 -34.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110773.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.066 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds