Wall clock time and date at job start Mon Mar 30 2020 01:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.38795 * 2 1 4 4 H 1.08001 * 119.99930 * 263.87769 * 3 2 1 5 5 C 1.37875 * 120.00093 * 83.60794 * 3 2 1 6 6 N 1.31517 * 120.00307 * 167.68883 * 5 3 2 7 7 Si 1.86802 * 119.99905 * 347.68566 * 5 3 2 8 8 H 1.48503 * 109.47189 * 96.15207 * 7 5 3 9 9 H 1.48500 * 109.47248 * 216.14647 * 7 5 3 10 10 H 1.48497 * 109.47257 * 336.14746 * 7 5 3 11 11 C 1.52583 * 109.38839 * 119.79889 * 2 1 3 12 12 C 1.52625 * 110.70187 * 49.27793 * 11 2 1 13 13 C 1.53104 * 109.87503 * 70.81799 * 12 11 2 14 14 S 1.81743 * 108.83874 * 296.93821 * 13 12 11 15 15 C 1.53096 * 109.38945 * 240.19522 * 2 1 3 16 16 H 1.08996 * 109.47217 * 60.00279 * 1 2 3 17 17 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 18 18 H 1.08998 * 109.47092 * 299.99622 * 1 2 3 19 19 H 0.97002 * 120.00373 * 179.97438 * 6 5 3 20 20 H 1.09003 * 109.22441 * 169.69440 * 11 2 1 21 21 H 1.08995 * 109.23171 * 289.05505 * 11 2 1 22 22 H 1.08997 * 109.46455 * 310.67425 * 12 11 2 23 23 H 1.09007 * 109.32115 * 190.86972 * 12 11 2 24 24 H 1.08993 * 109.57779 * 177.12852 * 13 12 11 25 25 H 1.08998 * 109.67905 * 56.80609 * 13 12 11 26 26 H 1.08995 * 109.57590 * 62.78409 * 15 2 1 27 27 H 1.09002 * 109.57268 * 183.16623 * 15 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0303 1.4215 0.0000 4 1 2.3036 1.8978 -0.9300 5 6 2.1337 2.1159 1.1866 6 7 2.7891 3.2555 1.2267 7 14 1.3430 1.4382 2.7374 8 1 2.3571 0.6916 3.5245 9 1 0.8113 2.5597 3.5527 10 1 0.2321 0.5246 2.3680 11 6 2.0366 -0.7153 1.2490 12 6 1.3371 -2.0608 1.4212 13 6 1.8209 -3.0401 0.3484 14 16 1.3501 -2.3996 -1.2860 15 6 2.0383 -0.7178 -1.2531 16 1 -0.3633 0.5138 -0.8900 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 2.8616 3.7442 2.0614 20 1 3.1109 -0.8762 1.1596 21 1 1.8388 -0.0949 2.1231 22 1 0.2597 -1.9247 1.3275 23 1 1.5666 -2.4629 2.4081 24 1 1.3571 -4.0136 0.5066 25 1 2.9050 -3.1388 0.4035 26 1 1.7165 -0.1741 -2.1413 27 1 3.1268 -0.7690 -1.2284 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261110773.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:22 Heat of formation + Delta-G solvation = -8.304487 kcal Electronic energy + Delta-G solvation = -10305.296641 eV Core-core repulsion = 8575.014390 eV Total energy + Delta-G solvation = -1730.282250 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 186.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.39881 -34.60725 -32.99855 -28.69096 -27.89166 -26.96498 -22.92633 -20.89391 -18.40404 -17.70681 -17.02055 -15.55780 -15.48154 -15.06040 -14.78915 -14.31059 -13.81774 -13.73293 -13.33917 -12.67544 -12.58272 -12.18015 -12.07070 -11.83514 -11.52156 -10.88423 -10.81925 -10.56763 -10.16415 -8.49661 -8.32689 -6.34490 0.99037 1.26478 1.37057 1.47635 1.69734 2.29036 3.02444 3.75637 3.92951 4.12030 4.20919 4.39337 4.53032 4.66894 4.73484 4.86848 4.90918 4.92903 5.00553 5.27405 5.27841 5.43458 5.69973 5.78930 6.26605 6.68857 7.29622 8.83040 Molecular weight = 186.08amu Principal moments of inertia in cm(-1) A = 0.056618 B = 0.017965 C = 0.015644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.426021 B = 1558.211465 C = 1789.355938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 C -0.513 4.513 4 H 0.032 0.968 5 C 0.012 3.988 6 N -0.946 5.946 7 Si 0.954 3.046 8 H -0.283 1.283 9 H -0.318 1.318 10 H -0.215 1.215 11 C -0.125 4.125 12 C -0.127 4.127 13 C -0.065 4.065 14 S -0.299 6.299 15 C -0.043 4.043 16 H 0.037 0.963 17 H 0.073 0.927 18 H 0.046 0.954 19 H 0.264 0.736 20 H 0.053 0.947 21 H 0.034 0.966 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.128 0.872 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 -12.792 1.355 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 C -0.552 4.552 4 H 0.050 0.950 5 C -0.185 4.185 6 N -0.586 5.586 7 Si 0.786 3.214 8 H -0.212 1.212 9 H -0.249 1.249 10 H -0.139 1.139 11 C -0.162 4.162 12 C -0.165 4.165 13 C -0.213 4.213 14 S -0.072 6.072 15 C -0.191 4.191 16 H 0.056 0.944 17 H 0.091 0.909 18 H 0.064 0.936 19 H 0.073 0.927 20 H 0.072 0.928 21 H 0.052 0.948 22 H 0.102 0.898 23 H 0.107 0.893 24 H 0.146 0.854 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.250 -13.212 0.576 13.891 hybrid contribution 0.874 1.341 1.437 2.151 sum -3.376 -11.871 2.013 12.505 Atomic orbital electron populations 1.22380 0.96245 1.01198 1.00532 1.18512 0.93984 0.92756 0.91193 1.21129 1.43238 0.97353 0.93472 0.94996 1.25947 0.94743 0.95225 1.02611 1.70089 1.41976 1.18228 1.28294 0.85889 0.80794 0.76300 0.78374 1.21152 1.24863 1.13939 1.21938 1.00157 0.96305 0.97757 1.21859 1.01821 0.93532 0.99312 1.23430 1.04427 1.01645 0.91783 1.86329 1.78191 1.17047 1.25614 1.23411 1.01446 0.92397 1.01864 0.94367 0.90886 0.93571 0.92674 0.92845 0.94811 0.89842 0.89283 0.85376 0.89535 0.89690 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.91 7.26 71.98 0.52 -5.39 15 2 C 0.04 1.66 0.49 -53.03 -0.03 1.64 15 3 C -0.51 -28.54 8.61 25.60 0.22 -28.32 15 4 H 0.03 1.99 8.05 -2.91 -0.02 1.96 15 5 C 0.01 0.69 5.35 84.65 0.45 1.14 15 6 N -0.95 -59.10 13.96 21.45 0.30 -58.80 15 7 Si 0.95 44.48 23.35 68.60 1.60 46.08 15 8 H -0.28 -12.73 6.98 99.48 0.69 -12.03 15 9 H -0.32 -15.27 7.11 99.48 0.71 -14.56 15 10 H -0.21 -8.79 4.54 99.48 0.45 -8.34 15 11 C -0.12 -4.97 3.63 30.33 0.11 -4.86 15 12 C -0.13 -3.78 5.57 30.50 0.17 -3.61 15 13 C -0.07 -1.71 6.45 72.02 0.46 -1.25 15 14 S -0.30 -9.69 20.78 -56.49 -1.17 -10.87 15 15 C -0.04 -1.70 5.24 72.01 0.38 -1.33 15 16 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 17 H 0.07 2.57 4.93 -2.39 -0.01 2.56 15 18 H 0.05 1.91 4.78 -2.39 -0.01 1.90 15 19 H 0.26 15.54 8.31 -92.71 -0.77 14.77 15 20 H 0.05 2.16 8.08 -2.39 -0.02 2.14 15 21 H 0.03 1.46 1.10 -2.39 0.00 1.46 15 22 H 0.08 2.48 5.78 -2.39 -0.01 2.47 15 23 H 0.09 2.21 8.14 -2.38 -0.02 2.19 15 24 H 0.13 2.59 8.14 -2.39 -0.02 2.57 15 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.08 3.46 8.14 -2.39 -0.02 3.44 15 27 H 0.07 2.71 8.14 -2.39 -0.02 2.69 15 Total: -1.00 -62.56 209.19 3.90 -58.66 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: 0.88 Total: 6.91 kcal Atomic # 6 Polarization: -44.27 SS G_CDS: 2.29 Total: -41.98 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: 0.30 Total: -58.80 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.60 Total: 46.08 kcal Atomic # 16 Polarization: -9.69 SS G_CDS: -1.17 Total: -10.87 kcal Total: -62.56 3.90 -58.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261110773.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.351 kcal (2) G-P(sol) polarization free energy of solvation -62.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds