Wall clock time and date at job start Mon Mar 30 2020 01:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48498 * 109.46755 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.46933 * 29.99749 * 3 2 1 6 6 H 1.48500 * 109.46965 * 149.99893 * 3 2 1 7 7 C 1.37883 * 119.99315 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99357 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00087 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.39861 * 125.89039 * 124.99683 * 10 9 7 12 12 C 1.35469 * 107.89881 * 179.97438 * 11 10 9 13 13 Cl 1.73599 * 126.14061 * 179.97438 * 12 11 10 14 14 N 1.34983 * 107.71089 * 0.26597 * 12 11 10 15 15 H 0.97007 * 126.03277 * 179.73456 * 14 12 11 16 16 N 1.30829 * 125.88736 * 304.95757 * 10 9 7 17 17 H 0.96999 * 119.99469 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.47476 * 60.00255 * 9 7 2 19 19 H 1.09001 * 109.47158 * 299.99465 * 9 7 2 20 20 H 1.08002 * 126.05350 * 359.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.2689 -4.6902 0.9287 12 6 3.2882 -5.5140 0.5856 13 17 3.7591 -6.9622 1.4191 14 7 3.8758 -5.0030 -0.5169 15 1 4.6370 -5.3806 -0.9848 16 7 3.1901 -3.8331 -0.8682 17 1 -0.4849 0.8401 -0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6239 -2.5567 0.8903 20 1 1.6040 -4.8182 1.7701 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112657.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:32 Heat of formation + Delta-G solvation = 55.751557 kcal Electronic energy + Delta-G solvation = -8912.816616 eV Core-core repulsion = 6943.894900 eV Total energy + Delta-G solvation = -1968.921716 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -40.59071 -36.67645 -33.48394 -31.45299 -29.29028 -27.72850 -23.47792 -20.92796 -19.10100 -17.89594 -16.27199 -14.56487 -14.46629 -13.98957 -13.33914 -12.43661 -12.20657 -11.74974 -11.43199 -11.38064 -10.75443 -10.73306 -10.10533 -9.69522 -9.40977 -8.61432 -8.33528 -8.21048 -6.02372 -4.03697 1.74473 2.15783 3.34618 3.38032 3.41587 3.48507 3.54558 4.48406 5.31751 5.40805 5.84413 6.12572 6.44181 7.18592 7.35652 7.52937 7.61974 7.94433 8.23524 8.40573 8.99671 9.59236 11.08764 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.089662 B = 0.008750 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.209260 B = 3199.122601 C = 3299.311441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.085 3.915 10 C 0.128 3.872 11 C -0.243 4.243 12 C 0.112 3.888 13 Cl -0.029 7.029 14 N -0.488 5.488 15 H 0.432 0.568 16 N -0.269 5.269 17 H 0.262 0.738 18 H 0.042 0.958 19 H 0.044 0.956 20 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.624 -10.549 1.891 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.547 4.547 8 H 0.078 0.922 9 C 0.047 3.953 10 C -0.038 4.038 11 C -0.274 4.274 12 C -0.043 4.043 13 Cl -0.001 7.001 14 N -0.198 5.198 15 H 0.276 0.724 16 N -0.093 5.093 17 H 0.072 0.928 18 H 0.060 0.940 19 H 0.062 0.938 20 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.073 -10.122 0.951 11.843 hybrid contribution 0.606 0.128 0.605 0.865 sum 6.679 -9.994 1.555 12.121 Atomic orbital electron populations 1.69948 1.05969 1.26873 1.50717 1.24981 0.94901 0.99276 0.95217 0.86491 0.79750 0.83041 0.78146 1.20604 1.21185 1.19914 1.21046 0.93209 0.89730 1.50717 0.92236 1.17929 0.91007 0.87317 0.99071 1.23320 0.94658 0.95768 0.90101 1.21255 1.02749 0.97397 1.05981 1.21642 0.98391 0.91730 0.92503 1.98364 1.91947 1.34102 1.75694 1.46636 1.29159 1.21551 1.22443 0.72429 1.77669 1.10181 0.97977 1.23464 0.92819 0.93970 0.93830 0.82995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.33 13.29 55.43 0.74 -25.59 14 2 C 0.06 1.63 5.46 -17.81 -0.10 1.54 14 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 14 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 14 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 14 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 14 7 C -0.51 -14.44 9.07 -34.44 -0.31 -14.75 14 8 H 0.06 1.71 7.74 -52.49 -0.41 1.31 14 9 C 0.09 2.21 5.55 -29.03 -0.16 2.05 14 10 C 0.13 2.90 6.43 -82.41 -0.53 2.37 14 11 C -0.24 -4.63 10.71 -39.96 -0.43 -5.06 14 12 C 0.11 1.85 7.83 -17.15 -0.13 1.72 14 13 Cl -0.03 -0.37 29.31 -51.86 -1.52 -1.89 14 14 N -0.49 -8.34 7.36 32.76 0.24 -8.10 14 15 H 0.43 5.70 8.96 -182.61 -1.64 4.07 14 16 N -0.27 -5.91 12.66 33.67 0.43 -5.48 14 17 H 0.26 7.27 8.31 -40.82 -0.34 6.93 14 18 H 0.04 1.15 8.14 -51.93 -0.42 0.73 14 19 H 0.04 1.13 8.12 -51.93 -0.42 0.71 14 20 H 0.15 2.58 8.06 -52.49 -0.42 2.16 14 LS Contribution 207.85 15.07 3.13 3.13 Total: -1.00 -30.20 207.85 -6.11 -36.31 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: -2.44 Total: -3.04 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.66 Total: -12.13 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 1.40 Total: -39.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -30.20 -6.11 -36.31 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112657.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.060 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.07 seconds