Wall clock time and date at job start Mon Mar 30 2020 01:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00290 * 2 1 4 4 H 1.48498 * 109.46755 * 269.99583 * 3 2 1 5 5 H 1.48499 * 109.46933 * 29.99749 * 3 2 1 6 6 H 1.48500 * 109.46965 * 149.99893 * 3 2 1 7 7 C 1.37883 * 119.99315 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99357 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00087 * 0.02562 * 7 2 1 10 10 C 1.50707 * 109.46968 * 179.97438 * 9 7 2 11 11 C 1.39861 * 125.89039 * 124.99683 * 10 9 7 12 12 C 1.35469 * 107.89881 * 179.97438 * 11 10 9 13 13 Cl 1.73599 * 126.14061 * 179.97438 * 12 11 10 14 14 N 1.34983 * 107.71089 * 0.26597 * 12 11 10 15 15 H 0.97007 * 126.03277 * 179.73456 * 14 12 11 16 16 N 1.30829 * 125.88736 * 304.95757 * 10 9 7 17 17 H 0.96999 * 119.99469 * 0.02562 * 1 2 3 18 18 H 1.08999 * 109.47476 * 60.00255 * 9 7 2 19 19 H 1.09001 * 109.47158 * 299.99465 * 9 7 2 20 20 H 1.08002 * 126.05350 * 359.97438 * 11 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0005 11 6 2.2689 -4.6902 0.9287 12 6 3.2882 -5.5140 0.5856 13 17 3.7591 -6.9622 1.4191 14 7 3.8758 -5.0030 -0.5169 15 1 4.6370 -5.3806 -0.9848 16 7 3.1901 -3.8331 -0.8682 17 1 -0.4849 0.8401 -0.0004 18 1 0.6246 -2.5571 -0.8897 19 1 0.6239 -2.5567 0.8903 20 1 1.6040 -4.8182 1.7701 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112657.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:32 Heat of formation + Delta-G solvation = 35.397974 kcal Electronic energy + Delta-G solvation = -8913.699213 eV Core-core repulsion = 6943.894900 eV Total energy + Delta-G solvation = -1969.804314 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 186.025 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.11825 -37.90174 -35.51725 -33.27415 -30.79917 -29.67121 -25.53798 -22.41155 -20.78878 -19.33856 -18.44399 -16.55422 -15.99535 -15.51470 -14.75632 -14.35911 -14.10316 -13.58248 -12.96557 -12.69045 -12.63380 -12.55617 -11.93200 -11.65164 -11.29846 -10.60421 -10.16189 -9.68216 -8.18945 -6.28371 0.42028 0.70664 1.42599 1.43961 1.54824 1.77466 2.19429 2.45298 3.14650 3.81367 4.33901 4.56358 4.91793 5.29416 5.42771 5.56578 5.74984 6.16140 6.26421 6.71633 6.81725 7.38678 8.92368 Molecular weight = 186.03amu Principal moments of inertia in cm(-1) A = 0.089662 B = 0.008750 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 312.209260 B = 3199.122601 C = 3299.311441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.051 0.949 9 C 0.092 3.908 10 C 0.103 3.897 11 C -0.260 4.260 12 C 0.132 3.868 13 Cl 0.017 6.983 14 N -0.468 5.468 15 H 0.451 0.549 16 N -0.301 5.301 17 H 0.267 0.733 18 H 0.017 0.983 19 H 0.033 0.967 20 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -11.244 2.391 13.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.566 4.566 8 H 0.069 0.931 9 C 0.054 3.946 10 C -0.063 4.063 11 C -0.290 4.290 12 C -0.024 4.024 13 Cl 0.045 6.955 14 N -0.181 5.181 15 H 0.298 0.702 16 N -0.126 5.126 17 H 0.076 0.924 18 H 0.035 0.965 19 H 0.052 0.948 20 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.422 -10.835 1.443 13.212 hybrid contribution 0.248 0.179 0.467 0.558 sum 7.670 -10.655 1.910 13.267 Atomic orbital electron populations 1.70052 1.07375 1.28013 1.51213 1.25834 0.95804 1.02842 0.94618 0.85448 0.78531 0.78656 0.78399 1.19979 1.20121 1.19433 1.21300 0.92982 0.91250 1.51026 0.93110 1.17609 0.91388 0.88344 0.97296 1.22861 0.95031 0.96239 0.92125 1.21360 1.04290 0.97076 1.06283 1.21665 0.96849 0.92344 0.91560 1.98391 1.91424 1.31086 1.74604 1.46523 1.28985 1.20144 1.22419 0.70224 1.77521 1.10740 1.00210 1.24146 0.92445 0.96542 0.94848 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.22 13.29 21.45 0.28 -54.93 14 2 C 0.01 0.43 5.46 84.66 0.46 0.89 14 3 Si 0.97 44.76 29.54 68.60 2.03 46.79 14 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 14 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 14 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 14 7 C -0.53 -30.55 9.07 25.60 0.23 -30.32 14 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 14 9 C 0.09 4.96 5.55 29.10 0.16 5.12 14 10 C 0.10 4.71 6.43 43.10 0.28 4.99 14 11 C -0.26 -9.65 10.71 22.02 0.24 -9.41 14 12 C 0.13 4.07 7.83 83.57 0.65 4.73 14 13 Cl 0.02 0.38 29.31 -2.72 -0.08 0.30 14 14 N -0.47 -15.11 7.36 -50.27 -0.37 -15.48 14 15 H 0.45 10.73 8.96 -213.32 -1.91 8.81 14 16 N -0.30 -13.13 12.66 -47.39 -0.60 -13.73 14 17 H 0.27 14.87 8.31 -92.71 -0.77 14.10 14 18 H 0.02 0.95 8.14 -2.39 -0.02 0.93 14 19 H 0.03 1.81 8.12 -2.39 -0.02 1.79 14 20 H 0.17 5.50 8.06 -2.91 -0.02 5.48 14 Total: -1.00 -64.42 207.85 2.64 -61.78 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -0.65 Total: -0.73 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: 2.02 Total: -24.00 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -0.68 Total: -84.15 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -64.42 2.64 -61.78 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112657.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.180 kcal (2) G-P(sol) polarization free energy of solvation -64.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds